Project measure / variable:   Schwartz2   pctNEUT_ova48

ID, description, units MPD:9848   pctNEUT_ova48   alveolar neutrophils (percentage of total lavage cells), 48h post-challenge   [%]  OVA-sensitized  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar neutrophils (percentage of total lavage cells), 48h post-challenge OVA-sensitized



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means5.81   %
Median of the strain means3.16   %
SD of the strain means± 7.82
Coefficient of variation (CV)1.35
Min–max range of strain means0   –   22.8   %
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 2139.6869 305.6696 7.2346 < 0.0001
Residuals 31 1309.7875 42.2512


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 4.12 1.44   4 0.718 0.348 2.0, 5.0 -0.22
A/J m 0.6 0.894   5 0.4 1.49 -0.67
BALB/cJ m 5.2 5.67   5 2.54 1.09 1.0, 15.0 -0.08
BTBR T+ Itpr3tf/J m 11.4 10.0   5 4.48 0.879 1.0, 24.0 0.71
C3H/HeJ m 0.2 0.447   5 0.2 2.24 -0.72
C57BL/6J m 22.8 13.3   5 5.95 0.584 1.0, 32.0 2.17
DBA/2J m 0.0 0.0   5 0.0 0.0 -0.74
FVB/NJ m 2.2 3.9   5 1.74 1.77 -0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 4.125 3.25 10.7535 -2.5035
A/J m 0.6 2.9069 6.5287 -5.3287
BALB/cJ m 5.2 2.9069 11.1287 -0.7287
BTBR T+ Itpr3tf/J m 11.4 2.9069 17.3287 5.4713
C3H/HeJ m 0.2 2.9069 6.1287 -5.7287
C57BL/6J m 22.8 2.9069 28.7287 16.8713
DBA/2J m 0.0 2.9069 5.9287 -5.9287
FVB/NJ m 2.2 2.9069 8.1287 -3.7287




  GWAS USING LINEAR MIXED MODELS