Project measure / variable:   Seburn1   ra_light

ID, description, units MPD:9230   ra_light   rearing activity, beam breaks per min, 3 day test   [n/min]  light  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - rearing activity, beam breaks per min, 3 day test light



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means2.98   n/min 2.62   n/min
Median of the strain means2.61   n/min 1.75   n/min
SD of the strain means± 2.39 ± 1.91
Coefficient of variation (CV)0.802 0.728
Min–max range of strain means0.256   –   9.10   n/min 0.215   –   6.04   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.2097 5.2097 2.0229 0.1564
strain 14 968.1545 69.1539 26.8527 < 0.0001
sex:strain 14 100.6367 7.1883 2.7913 0.0008
Residuals 210 540.8137 2.5753


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.256 0.233   8 0.0822 0.908 0.03, 0.71 -1.14
129S1/SvImJ m 0.603 0.425   8 0.15 0.705 0.18, 1.28 -1.06
A/J f 1.36 0.372   8 0.131 0.273 0.68, 1.83 -0.68
A/J m 1.6 0.342   8 0.121 0.213 1.22, 2.3 -0.53
AKR/J f 1.7 0.532   8 0.188 0.314 0.78, 2.35 -0.54
AKR/J m 1.72 0.716   8 0.253 0.416 1.14, 3.23 -0.47
BALB/cJ f 2.91 0.937   8 0.331 0.322 1.91, 4.94 -0.03
BALB/cJ m 4.34 1.23   8 0.436 0.284 2.51, 5.95 0.9
BTBR T+ Itpr3tf/J f 2.61 0.915   8 0.324 0.35 1.03, 3.94 -0.16
BTBR T+ Itpr3tf/J m 2.94 1.39   8 0.492 0.473 1.24, 5.74 0.17
C3H/HeJ f 1.31 0.52   8 0.184 0.396 0.57, 2.04 -0.7
C3H/HeJ m 0.942 0.259   8 0.0917 0.275 0.54, 1.39 -0.88
C57BL/6J f 3.26 0.627   8 0.222 0.192 2.53, 4.3 0.12
C57BL/6J m 1.79 0.808   8 0.286 0.452 0.55, 3.07 -0.43
CAST/EiJ f 9.1 4.26   8 1.51 0.469 4.26, 14.8 2.56
CAST/EiJ m 4.95 2.61   8 0.923 0.528 1.73, 9.16 1.22
CBA/J f 1.57 0.75   8 0.265 0.477 0.96, 3.17 -0.59
CBA/J m 1.04 0.394   8 0.139 0.377 0.58, 1.83 -0.83
FVB/NJ f 5.49 3.24   8 1.15 0.591 1.83, 10.2 1.05
FVB/NJ m 6.04 3.46   8 1.22 0.572 2.41, 13.2 1.79
LP/J f 0.544 0.539   8 0.191 0.992 0.04, 1.58 -1.02
LP/J m 0.215 0.0902   8 0.0319 0.42 0.12, 0.4 -1.26
NOD/ShiLtJ f 6.32 3.05   8 1.08 0.482 2.51, 10.6 1.39
NOD/ShiLtJ m 5.3 1.14   8 0.404 0.216 3.05, 7.11 1.41
NZB/BlNJ f 1.63 0.785   8 0.278 0.482 0.76, 2.82 -0.57
NZB/BlNJ m 0.629 0.353   8 0.125 0.561 0.11, 1.17 -1.04
PL/J f 2.79 1.25   8 0.442 0.448 1.17, 5.01 -0.08
PL/J m 4.13 1.37   8 0.483 0.331 2.31, 6.34 0.79
SJL/J m 1.57 0.16   8 0.0567 0.102 1.26, 1.79 -0.55
SWR/J f 3.9 1.97   8 0.697 0.506 2.21, 8.32 0.38
SWR/J m 4.09 1.51   8 0.534 0.369 2.91, 7.14 0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.2562 0.5674 1.3747 0.0
129S1/SvImJ m 0.6025 0.5674 1.721 0.0
A/J f 1.3625 0.5674 2.481 0.244
A/J m 1.6013 0.5674 2.7197 0.4828
AKR/J f 1.695 0.5674 2.8135 0.5765
AKR/J m 1.7187 0.5674 2.8372 0.6003
BALB/cJ f 2.91 0.5674 4.0285 1.7915
BALB/cJ m 4.3425 0.5674 5.461 3.224
BTBR T+ Itpr3tf/J f 2.6125 0.5674 3.731 1.494
BTBR T+ Itpr3tf/J m 2.94 0.5674 4.0585 1.8215
C3H/HeJ f 1.3125 0.5674 2.431 0.194
C3H/HeJ m 0.9425 0.5674 2.061 0.0
C57BL/6J f 3.2563 0.5674 4.3747 2.1378
C57BL/6J m 1.7875 0.5674 2.906 0.669
CAST/EiJ f 9.0987 0.5674 10.2172 7.9803
CAST/EiJ m 4.9462 0.5674 6.0647 3.8278
CBA/J f 1.5725 0.5674 2.691 0.454
CBA/J m 1.0438 0.5674 2.1622 0.0
FVB/NJ f 5.4888 0.5674 6.6072 4.3703
FVB/NJ m 6.04 0.5674 7.1585 4.9215
LP/J f 0.5438 0.5674 1.6622 0.0
LP/J m 0.215 0.5674 1.3335 0.0
NOD/ShiLtJ f 6.325 0.5674 7.4435 5.2065
NOD/ShiLtJ m 5.2963 0.5674 6.4147 4.1778
NZB/BlNJ f 1.63 0.5674 2.7485 0.5115
NZB/BlNJ m 0.6288 0.5674 1.7472 0.0
PL/J f 2.7875 0.5674 3.906 1.669
PL/J m 4.1275 0.5674 5.246 3.009
SWR/J f 3.8962 0.5674 5.0147 2.7778
SWR/J m 4.095 0.5674 5.2135 2.9765


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.4294 0.4012 1.2203 0.0
A/J both 1.4819 0.4012 2.2728 0.691
AKR/J both 1.7069 0.4012 2.4978 0.916
BALB/cJ both 3.6263 0.4012 4.4171 2.8354
BTBR T+ Itpr3tf/J both 2.7763 0.4012 3.5671 1.9854
C3H/HeJ both 1.1275 0.4012 1.9184 0.3366
C57BL/6J both 2.5219 0.4012 3.3128 1.731
CAST/EiJ both 7.0225 0.4012 7.8134 6.2316
CBA/J both 1.3081 0.4012 2.099 0.5172
FVB/NJ both 5.7644 0.4012 6.5553 4.9735
LP/J both 0.3794 0.4012 1.1703 0.0
NOD/ShiLtJ both 5.8106 0.4012 6.6015 5.0197
NZB/BlNJ both 1.1294 0.4012 1.9203 0.3385
PL/J both 3.4575 0.4012 4.2484 2.6666
SWR/J both 3.9956 0.4012 4.7865 3.2047




  GWAS USING LINEAR MIXED MODELS