Project measure / variable:   CSNA03   entries_repeat_HB_in

ID, description, units MPD:90271   entries_repeat_HB_in   number of repeat entries (hole board), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-13wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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CSNA03 - number of repeat entries (hole board), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means29.185   n 21.757   n
Median of the strain means22.477   n 12.95   n
SD of the strain means± 19.901 ± 18.888
Coefficient of variation (CV)0.6819 0.8681
Min–max range of strain means7.7292   –   63.29   n 5.1607   –   51.39   n
Mean sample size per strain40.3   mice 40.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13926.2258 13926.2258 24.5352 < 0.0001
strain 9 271156.3364 30128.4818 53.0804 < 0.0001
sex:strain 9 6139.3126 682.1458 1.2018 0.2904
Residuals 788 447269.5795 567.601


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 26.659 18.965   41 2.9619 0.7114 2.0, 78.0 -0.13
129S1/SvImJ m 14.044 13.455   45 2.0058 0.958 -0.41
A/J f 7.7292 8.6976   48 1.2554 1.1253 -1.08
A/J m 5.1607 6.3009   56 0.84199 1.2209 -0.88
C57BL/6J f 18.295 13.473   61 1.725 0.7364 -0.55
C57BL/6J m 14.828 11.978   58 1.5728 0.8078 -0.37
C57BL/6NJ f 8.6667 6.7734   12 1.9553 0.7815 -1.03
C57BL/6NJ m 6.75 9.1366   12 2.6375 1.3536 -0.79
CAST/EiJ f 53.94 32.207   33 5.6066 0.5971 8.0, 129.0 1.24
CAST/EiJ m 47.667 27.806   30 5.0767 0.5834 4.0, 123.0 1.37
DBA/2J f 17.542 22.045   24 4.5 1.2567 1.0, 110.0 -0.59
DBA/2J m 9.1739 10.582   23 2.2064 1.1534 -0.67
NOD/ShiLtJ f 31.429 47.701   42 7.3605 1.5178 0.11
NOD/ShiLtJ m 11.857 12.038   42 1.8575 1.0152 -0.52
NZO/HlLtJ f 14.488 14.554   43 2.2195 1.0045 -0.74
NZO/HlLtJ m 9.5116 9.3945   43 1.4326 0.9877 -0.65
PWK/PhJ f 49.812 26.127   48 3.7711 0.5245 13.0, 140.0 1.04
PWK/PhJ m 47.191 29.824   47 4.3503 0.632 8.0, 127.0 1.35
WSB/EiJ f 63.29 46.266   51 6.4786 0.731 3.0, 192.0 1.71
WSB/EiJ m 51.39 27.975   49 3.9964 0.5444 3.0, 115.0 1.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 26.6585365854 3.7207427438 33.962276574 19.3547965968
129S1/SvImJ m 14.0444444444 3.5515285885 21.0160205944 7.0728682945
A/J f 7.7291666667 3.4387527693 14.4793662481 0.9789670853
A/J m 5.1607142857 3.1836664319 11.4101847357 -1.0887561642
C57BL/6J f 18.2950819672 3.0503990311 24.2829513037 12.3072126307
C57BL/6J m 14.8275862069 3.1282940961 20.9683619226 8.6868104912
C57BL/6NJ f 8.6666666667 6.8775055385 22.1670658295 -4.8337324961
C57BL/6NJ m 6.75 6.8775055385 20.2503991628 -6.7503991628
CAST/EiJ f 53.9393939394 4.1472918845 62.0804409472 45.7983469316
CAST/EiJ m 47.6666666667 4.3497164244 56.2050688019 39.1282645315
DBA/2J f 17.5416666667 4.8631308039 27.0878904634 7.9954428699
DBA/2J m 9.1739130435 4.9677262281 18.9254554648 -0.5776293778
NOD/ShiLtJ f 31.4285714286 3.676181343 38.6448383217 24.2123045354
NOD/ShiLtJ m 11.8571428571 3.676181343 19.0734097503 4.640875964
NZO/HlLtJ f 14.488372093 3.6331835908 21.6202353002 7.3565088858
NZO/HlLtJ m 9.511627907 3.6331835908 16.6434911142 2.3797646998
PWK/PhJ f 49.8125 3.4387527693 56.5626995814 43.0623004186
PWK/PhJ m 47.1914893617 3.4751427008 54.0131216158 40.3698571076
WSB/EiJ f 63.2941176471 3.3360802089 69.8427731454 56.7454621487
WSB/EiJ m 51.387755102 3.4034825777 58.068720037 44.7067901671


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 20.3514905149 2.5718321233 25.399943046 15.3030379838
A/J both 6.4449404762 2.3431150504 11.0444261891 1.8454547633
C57BL/6J both 16.5613340871 2.1846714971 20.8497984271 12.2728697471
C57BL/6NJ both 7.7083333333 4.8631308039 17.2545571301 -1.8378904634
CAST/EiJ both 50.803030303 3.0049984587 56.701779268 44.9042813381
DBA/2J both 13.3577898551 3.4759295553 20.180966688 6.5346130222
NOD/ShiLtJ both 21.6428571429 2.5994527565 26.7455283978 16.5401858879
NZO/HlLtJ both 12.0 2.5690487543 17.0429888363 6.9570111637
PWK/PhJ both 48.5019946809 2.4444650437 53.3004283054 43.7035610563
WSB/EiJ both 57.3409363745 2.382914435 62.0185474448 52.6633253043




  GWAS USING LINEAR MIXED MODELS