Project measure / variable:   CSNA03   pct_amb_time_light_LD_in

ID, description, units MPD:90151   pct_amb_time_light_LD_in   percentage of time spent ambulatory in light, 20 min test (LD box), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of time spent ambulatory in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means37.871   % 37.306   %
Median of the strain means39.924   % 38.514   %
SD of the strain means± 8.4278 ± 10.034
Coefficient of variation (CV)0.2225 0.269
Min–max range of strain means17.791   –   46.996   % 20.638   –   49.509   %
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 561.3147 561.3147 1.5426 0.2146
strain 9 61977.2205 6886.3578 18.9256 < 0.0001
sex:strain 9 5074.2584 563.8065 1.5495 0.1263
Residuals 840 305646.4206 363.8648


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 36.451 38.603   49 5.5147 1.059 -0.17
129S1/SvImJ m 33.268 34.151   49 4.8787 1.0265 -0.4
A/J f 32.105 35.471   60 4.5793 1.1048 -0.68
A/J m 20.638 28.565   61 3.6573 1.3841 -1.66
C57BL/6J f 41.107 13.548   60 1.7491 0.3296 19.35, 100.0 0.38
C57BL/6J m 39.039 7.0632   59 0.91955 0.1809 26.682, 58.04 0.17
C57BL/6NJ f 43.653 13.2   13 3.661 0.3024 23.98, 77.68 0.69
C57BL/6NJ m 49.509 15.909   13 4.4125 0.3213 33.086, 89.28 1.22
CAST/EiJ f 45.381 8.1895   33 1.4256 0.1805 24.915, 78.25 0.89
CAST/EiJ m 44.71 11.07   30 2.0211 0.2476 1.3072, 77.15 0.74
DBA/2J f 35.377 5.9372   24 1.2119 0.1678 21.764, 49.951 -0.3
DBA/2J m 35.142 8.0272   24 1.6386 0.2284 19.688, 52.02 -0.22
NOD/ShiLtJ f 46.996 11.428   47 1.6669 0.2432 1.3134, 70.09 1.08
NOD/ShiLtJ m 49.124 8.5959   44 1.2959 0.175 32.71, 77.05 1.18
NZO/HlLtJ f 17.791 8.9158   47 1.3005 0.5011 1.0323, 46.547 -2.38
NZO/HlLtJ m 21.813 8.6671   46 1.2779 0.3973 0.17212, 39.685 -1.54
PWK/PhJ f 41.055 8.5986   47 1.2542 0.2094 28.032, 70.35 0.38
PWK/PhJ m 37.99 6.1635   48 0.88963 0.1622 11.765, 52.63 0.07
WSB/EiJ f 38.792 7.786   55 1.0499 0.2007 21.747, 73.0 0.11
WSB/EiJ m 41.822 8.2732   51 1.1585 0.1978 22.146, 75.95 0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 36.4509042857 2.7250343058 41.7995801517 31.1022284198
129S1/SvImJ m 33.2676844898 2.7250343058 38.6163603557 27.9190086239
A/J f 32.1052583333 2.462602913 36.938835929 27.2716807376
A/J m 20.6378937705 2.4423342315 25.431688158 15.844099383
C57BL/6J f 41.1073 2.462602913 45.9408775957 36.2737224043
C57BL/6J m 39.0390677966 2.4833847406 43.9134357998 34.1646997934
C57BL/6NJ f 43.6529230769 5.2905197245 54.0371135103 33.2687326436
C57BL/6NJ m 49.5085384615 5.2905197245 59.8927288949 39.1243480282
CAST/EiJ f 45.3811818182 3.3205730904 51.8987765187 38.8635871177
CAST/EiJ m 44.7096066667 3.4826464382 51.5453176573 37.873895676
DBA/2J f 35.377375 3.8937170888 43.0199322248 27.7348177752
DBA/2J m 35.1422083333 3.8937170888 42.7847655581 27.4996511085
NOD/ShiLtJ f 46.9960297872 2.7824097409 52.4573217052 41.5347378693
NOD/ShiLtJ m 49.1235909091 2.8757006514 54.7679934913 43.4791883269
NZO/HlLtJ f 17.7913319149 2.7824097409 23.2526238329 12.3300399969
NZO/HlLtJ m 21.8125852174 2.8124907204 27.332919845 16.2922505898
PWK/PhJ f 41.0547659574 2.7824097409 46.5160578754 35.5934740395
PWK/PhJ m 37.9900208333 2.7532737575 43.3941248726 32.5859167941
WSB/EiJ f 38.7916545455 2.5721048558 43.8401616919 33.743147399
WSB/EiJ m 41.8218627451 2.6710678867 47.0646137488 36.5791117414


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 34.8592943878 1.9268902366 38.6413793629 31.0772094126
A/J both 26.3715760519 1.7341719642 29.7753951204 22.9677569834
C57BL/6J both 40.0731838983 1.7486861408 43.5054912784 36.6408765182
C57BL/6NJ both 46.5807307692 3.7409623732 53.9234622418 39.2379992967
CAST/EiJ both 45.0453942424 2.4059837833 49.7678402566 40.3229482282
DBA/2J both 35.2597916667 2.7532737575 40.6638957059 29.8556876274
NOD/ShiLtJ both 48.0598103482 2.0007160095 51.9867999688 44.1328207275
NZO/HlLtJ both 19.8019585661 1.9781246181 23.6846059817 15.9193111506
PWK/PhJ both 39.5223933954 1.9571867789 43.3639441851 35.6808426057
WSB/EiJ both 40.3067586453 1.854071671 43.9459159136 36.6676013769




  GWAS USING LINEAR MIXED MODELS