Project measure / variable:   CSNA03   pct_dist_light_LD_in

ID, description, units MPD:90139   pct_dist_light_LD_in   percentage of total distance traveled in light, 20 min test (LD box), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of total distance traveled in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means38.309   % 37.659   %
Median of the strain means40.247   % 39.23   %
SD of the strain means± 8.4764 ± 10.385
Coefficient of variation (CV)0.2213 0.2758
Min–max range of strain means18.239   –   47.764   % 21.019   –   50.73   %
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 685.3575 685.3575 1.9543 0.1625
strain 9 64592.9943 7176.9994 20.4657 < 0.0001
sex:strain 9 5055.5811 561.7312 1.6018 0.1103
Residuals 840 294575.4246 350.685


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 36.054 37.739   49 5.3913 1.0467 -0.27
129S1/SvImJ m 31.968 33.694   49 4.8134 1.054 -0.55
A/J f 32.674 35.582   60 4.5936 1.089 -0.66
A/J m 21.019 28.39   61 3.635 1.3507 -1.6
C57BL/6J f 41.842 13.166   60 1.6997 0.3147 22.401, 100.0 0.42
C57BL/6J m 40.018 6.2134   59 0.80891 0.1553 26.405, 56.77 0.23
C57BL/6NJ f 44.16 12.687   13 3.5187 0.2873 23.964, 74.36 0.69
C57BL/6NJ m 50.73 15.193   13 4.2138 0.2995 33.214, 87.29 1.26
CAST/EiJ f 45.836 7.8079   33 1.3592 0.1703 24.1, 75.6 0.89
CAST/EiJ m 44.781 10.587   30 1.9329 0.2364 2.2575, 74.77 0.69
DBA/2J f 36.022 5.8569   24 1.1955 0.1626 21.413, 49.077 -0.27
DBA/2J m 36.157 7.9591   24 1.6246 0.2201 20.841, 53.45 -0.14
NOD/ShiLtJ f 47.764 10.887   47 1.5881 0.2279 1.1343, 68.4 1.12
NOD/ShiLtJ m 50.19 7.7172   44 1.1634 0.1538 36.175, 76.43 1.21
NZO/HlLtJ f 18.239 8.5583   47 1.2484 0.4692 1.7149, 48.127 -2.37
NZO/HlLtJ m 21.593 8.1051   46 1.195 0.3754 0.67081, 34.779 -1.55
PWK/PhJ f 41.11 7.6978   47 1.1228 0.1872 30.46, 66.14 0.33
PWK/PhJ m 38.443 5.925   48 0.8552 0.1541 12.279, 54.37 0.08
WSB/EiJ f 39.384 6.6286   55 0.8938 0.1683 26.03, 67.41 0.13
WSB/EiJ m 41.694 7.6924   51 1.0771 0.1845 20.911, 71.39 0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 36.0542632653 2.6752265947 41.3051769484 30.8033495822
129S1/SvImJ m 31.9680228571 2.6752265947 37.2189365402 26.7171091741
A/J f 32.6739301667 2.417591878 37.4191604576 27.9286998757
A/J m 21.0194680328 2.3976936641 25.7256422662 16.3132937994
C57BL/6J f 41.8416166667 2.417591878 46.5868469576 37.0963863757
C57BL/6J m 40.0178813559 2.4379938589 44.8031564943 35.2326062176
C57BL/6NJ f 44.1596923077 5.1938205096 54.3540822839 33.9653023315
C57BL/6NJ m 50.731 5.1938205096 60.9253899762 40.5366100238
CAST/EiJ f 45.8356060606 3.2598802233 52.2340732796 39.4371388416
CAST/EiJ m 44.7809833333 3.4189912222 51.4917523674 38.0702142993
DBA/2J f 36.0219583333 3.8225483936 43.524826204 28.5190904626
DBA/2J m 36.1567083333 3.8225483936 43.659576204 28.6538404626
NOD/ShiLtJ f 47.7644744681 2.7315533314 53.1259458262 42.4030031099
NOD/ShiLtJ m 50.1883409091 2.8231390867 55.729576066 44.6471057521
NZO/HlLtJ f 18.2391276596 2.7315533314 23.6005990177 12.8776563014
NZO/HlLtJ m 21.5929654348 2.761084496 27.01240033 16.1735305396
PWK/PhJ f 41.1098510638 2.7315533314 46.471322422 35.7483797057
PWK/PhJ m 38.4429375 2.7029498905 43.7482662497 33.1376087503
WSB/EiJ f 39.3838 2.5250923631 44.3400313961 34.4275686039
WSB/EiJ m 41.6941372549 2.6222465646 46.8410621522 36.5472123576


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 34.0111430612 1.8916708663 37.7240997339 30.2981863885
A/J both 26.8466990997 1.7024750656 30.1883037453 23.5050944541
C57BL/6J both 40.9297490113 1.7167239546 44.299321264 37.5601767586
C57BL/6NJ both 47.4453461538 3.6725857026 54.6538684361 40.2368238716
CAST/EiJ both 45.308294697 2.3620076232 49.9444246504 40.6721647435
DBA/2J both 36.0893333333 2.7029498905 41.394662083 30.7840045836
NOD/ShiLtJ both 48.9764076886 1.9641472644 52.8316204645 45.1211949127
NZO/HlLtJ both 19.9160465472 1.9419687946 23.7277275972 16.1043654972
PWK/PhJ both 39.7763942819 1.9214136536 43.5477298632 36.0050587006
WSB/EiJ both 40.5389686275 1.820183266 44.1116100015 36.9663272534




  GWAS USING LINEAR MIXED MODELS