Project measure / variable:   CSNA03   pct_time_perimeter_OFT_in

ID, description, units MPD:90121   pct_time_perimeter_OFT_in   percentage of total time spent in perimeter, 60 min test (OFT), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of total time spent in perimeter, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means51.28   % 49.446   %
Median of the strain means56.11   % 52.28   %
SD of the strain means± 15.637 ± 14.008
Coefficient of variation (CV)0.3049 0.2833
Min–max range of strain means10.905   –   63.45   % 14.169   –   61.72   %
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 569.177 569.177 0.9751 0.3237
strain 9 179865.249 19985.0277 34.2387 < 0.0001
sex:strain 9 3329.6205 369.9578 0.6338 0.7687
Residuals 840 490305.3694 583.6969


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.905 25.25   48 3.6445 2.3155 -2.58
129S1/SvImJ m 14.169 30.179   49 4.3112 2.13 -2.52
A/J f 55.58 41.442   59 5.3953 0.7457 0.28
A/J m 47.191 42.583   61 5.4522 0.9024 -0.16
C57BL/6J f 53.46 5.9805   61 0.76572 0.1119 39.987, 69.19 0.14
C57BL/6J m 52.93 7.3376   59 0.95527 0.1386 28.368, 70.08 0.25
C57BL/6NJ f 59.34 20.877   13 5.7903 0.3518 0.52
C57BL/6NJ m 51.64 11.788   13 3.2694 0.2283 25.91, 66.13 0.16
CAST/EiJ f 56.64 10.207   33 1.7768 0.1802 17.015, 75.44 0.34
CAST/EiJ m 60.31 6.2132   30 1.1344 0.103 41.78, 70.47 0.78
DBA/2J f 62.81 8.1661   23 1.7028 0.13 38.19, 75.9 0.74
DBA/2J m 55.96 18.921   25 3.7842 0.3381 0.47
NOD/ShiLtJ f 42.807 6.1642   47 0.89915 0.144 28.608, 59.96 -0.54
NOD/ShiLtJ m 44.086 7.242   44 1.0918 0.1643 31.477, 61.71 -0.38
NZO/HlLtJ f 47.304 41.779   47 6.0942 0.8832 -0.25
NZO/HlLtJ m 45.131 43.802   46 6.4583 0.9706 -0.31
PWK/PhJ f 60.49 5.74   48 0.8285 0.0949 42.388, 72.36 0.59
PWK/PhJ m 61.32 10.803   47 1.5758 0.1762 0.85
WSB/EiJ f 63.45 5.6834   55 0.76635 0.0896 38.978, 74.19 0.78
WSB/EiJ m 61.72 6.6195   52 0.91796 0.1072 35.521, 73.73 0.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.9045625 3.4871695434 17.7491514057 4.0599735943
129S1/SvImJ m 14.1685714286 3.4514027564 20.9429575667 7.3941852905
A/J f 55.5761016949 3.1453405635 61.7497513721 49.4024520177
A/J m 47.1906557377 3.0933478823 53.2622545898 41.1190568856
C57BL/6J f 53.4628360656 3.0933478823 59.5344349176 47.3912372135
C57BL/6J m 52.9272542373 3.1453405635 59.1009039145 46.7536045601
C57BL/6NJ f 59.3372307692 6.7007282518 72.4893673896 46.1850941489
C57BL/6NJ m 51.6433846154 6.7007282518 64.7955212357 38.491247995
CAST/EiJ f 56.6375454545 4.2056847112 64.8924302707 48.3826606383
CAST/EiJ m 60.313 4.4109593377 68.9707962359 51.6552037641
DBA/2J f 62.8139130435 5.037670564 72.7018131367 52.9260129502
DBA/2J m 55.95636 4.831963859 65.4405005933 46.4722194067
NOD/ShiLtJ f 42.8069787234 3.524071836 49.7239991585 35.8899582884
NOD/ShiLtJ m 44.0855227273 3.6422298002 51.2344626834 36.9365827711
NZO/HlLtJ f 47.3044680851 3.524071836 54.2214885202 40.3874476501
NZO/HlLtJ m 45.1306521739 3.5621710172 52.1224533815 38.1388509663
PWK/PhJ f 60.4897291667 3.4871695434 67.3343180724 53.6451402609
PWK/PhJ m 61.3175744681 3.524071836 68.2345949031 54.400554033
WSB/EiJ f 63.4476 3.2577093691 69.8418062836 57.0533937164
WSB/EiJ m 61.7232115385 3.3503641259 68.2992798486 55.1471432283


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 12.5365669643 2.4531883545 17.3516657389 7.7214681897
A/J both 51.3833787163 2.2057860493 55.7128781954 47.0538792372
C57BL/6J both 53.1950451514 2.2057860493 57.5245446305 48.8655456724
C57BL/6NJ both 55.4903076923 4.7381303857 64.7902726837 46.190342701
CAST/EiJ both 58.4752727273 3.0473080813 64.4565050207 52.4940404339
DBA/2J both 59.3851365217 3.4902005474 66.2356746584 52.5345983851
NOD/ShiLtJ both 43.4462507253 2.5340146124 48.419994642 38.4725068086
NZO/HlLtJ both 46.2175601295 2.505401398 51.1351422545 41.2999780045
PWK/PhJ both 60.9036518174 2.4788824967 65.7691828518 56.038120783
WSB/EiJ both 62.5854057692 2.3365364383 67.1715410817 57.9992704568




  GWAS USING LINEAR MIXED MODELS