Project measure / variable:   JaxCC1   rears_2

ID, description, units MPD:89005   rears_2   number of rears, 20 min test   [n]  2nd 5min  
Data set, strains JaxCC1   CC   17 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - number of rears, 20 min test 2nd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested17 strains17 strains
Mean of the strain means23.952   n 24.288   n
Median of the strain means23.625   n 23.75   n
SD of the strain means± 8.0165 ± 10.18
Coefficient of variation (CV)0.3347 0.4191
Min–max range of strain means4.1667   –   36.5   n 4.5714   –   44.75   n
Mean sample size per strain6.8   mice 7.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.9263 6.9263 0.0728 0.7876
strain 16 15679.4779 979.9674 10.3017 < 0.0001
sex:strain 16 2970.5419 185.6589 1.9517 0.0178
Residuals 204 19405.8774 95.1268


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 26.125 15.028   8 5.3132 0.5752 8.0, 45.0 0.27
CC002/UncJ m 28.429 8.8291   7 3.3371 0.3106 17.0, 41.0 0.41
CC003/UncJ f 22.4 7.5697   5 3.3853 0.3379 16.0, 34.0 -0.19
CC003/UncJ m 26.25 7.5   4 3.75 0.2857 18.0, 34.0 0.19
CC004/TauUncJ f 36.5 3.1168   8 1.1019 0.0854 32.0, 40.0 1.57
CC004/TauUncJ m 44.75 5.0639   8 1.7904 0.1132 38.0, 53.0 2.01
CC006/TauUncJ f 33.25 6.8007   4 3.4004 0.2045 26.0, 40.0 1.16
CC006/TauUncJ m 28.125 11.307   8 3.9975 0.402 9.0, 40.0 0.38
CC009/UncJ f 17.375 9.5907   8 3.3908 0.552 1.0, 31.0 -0.82
CC009/UncJ m 27.0 9.0079   8 3.1848 0.3336 14.0, 41.0 0.27
CC013/GeniUncJ f 24.0 9.5019   8 3.3594 0.3959 17.0, 44.0 0.01
CC013/GeniUncJ m 33.5 13.964   4 6.9821 0.4168 19.0, 52.0 0.9
CC017/UncJ f 21.0 8.1976   6 3.3466 0.3904 10.0, 31.0 -0.37
CC017/UncJ m 19.0 10.794   5 4.827 0.5681 7.0, 30.0 -0.52
CC018/UncJ f 34.125 9.7605   8 3.4509 0.286 14.0, 48.0 1.27
CC018/UncJ m 39.125 7.0597   8 2.496 0.1804 30.0, 48.0 1.46
CC019/TauUncJ f 21.5 9.6214   8 3.4017 0.4475 1.0, 34.0 -0.31
CC019/TauUncJ m 17.857 5.2735   7 1.9932 0.2953 10.0, 23.0 -0.63
CC024/GeniUncJ f 21.0 11.431   7 4.3205 0.5443 10.0, 45.0 -0.37
CC024/GeniUncJ m 23.75 13.134   8 4.6435 0.553 7.0, 49.0 -0.05
CC025/GeniUncJ f 32.0 3.3665   4 1.6833 0.1052 30.0, 37.0 1.0
CC025/GeniUncJ m 11.333 13.125   6 5.3583 1.1581 1.0, 35.0 -1.27
CC026/GeniUncJ f 24.625 12.42   8 4.3913 0.5044 6.0, 41.0 0.08
CC026/GeniUncJ m 33.75 5.1755   8 1.8298 0.1533 23.0, 41.0 0.93
CC032/GeniUncJ f 17.375 11.211   8 3.9638 0.6453 5.0, 39.0 -0.82
CC032/GeniUncJ m 14.75 5.8248   8 2.0594 0.3949 8.0, 22.0 -0.94
CC040/TauUncJ f 23.625 12.716   8 4.4958 0.5382 4.0, 49.0 -0.04
CC040/TauUncJ m 23.5 7.1314   8 2.5213 0.3035 13.0, 34.0 -0.08
CC041/TauUncJ f 4.1667 2.4014   6 0.98036 0.5763 2.0, 8.0 -2.47
CC041/TauUncJ m 4.5714 4.1173   7 1.5562 0.9007 1.0, 13.0 -1.94
CC051/TauUncJ f 31.375 15.747   8 5.5676 0.5019 1.0, 49.0 0.93
CC051/TauUncJ m 21.7 13.233   10 4.1848 0.6098 9.0, 53.0 -0.25
CC068/TauUncJ f 16.75 6.1847   4 3.0923 0.3692 12.0, 25.0 -0.9
CC068/TauUncJ m 15.5 6.5465   8 2.3146 0.4224 8.0, 24.0 -0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 26.125 3.4483 32.9239 19.3261
CC002/UncJ m 28.4286 3.6864 35.6969 21.1602
CC003/UncJ f 22.4 4.3618 31.0 13.8
CC003/UncJ m 26.25 4.8766 35.8651 16.6349
CC004/TauUncJ f 36.5 3.4483 43.2989 29.7011
CC004/TauUncJ m 44.75 3.4483 51.5489 37.9511
CC006/TauUncJ f 33.25 4.8766 42.8651 23.6349
CC006/TauUncJ m 28.125 3.4483 34.9239 21.3261
CC009/UncJ f 17.375 3.4483 24.1739 10.5761
CC009/UncJ m 27.0 3.4483 33.7989 20.2011
CC013/GeniUncJ f 24.0 3.4483 30.7989 17.2011
CC013/GeniUncJ m 33.5 4.8766 43.1151 23.8849
CC017/UncJ f 21.0 3.9818 28.8507 13.1493
CC017/UncJ m 19.0 4.3618 27.6 10.4
CC018/UncJ f 34.125 3.4483 40.9239 27.3261
CC018/UncJ m 39.125 3.4483 45.9239 32.3261
CC019/TauUncJ f 21.5 3.4483 28.2989 14.7011
CC019/TauUncJ m 17.8571 3.6864 25.1255 10.5888
CC024/GeniUncJ f 21.0 3.6864 28.2683 13.7317
CC024/GeniUncJ m 23.75 3.4483 30.5489 16.9511
CC025/GeniUncJ f 32.0 4.8766 41.6151 22.3849
CC025/GeniUncJ m 11.3333 3.9818 19.184 3.4826
CC026/GeniUncJ f 24.625 3.4483 31.4239 17.8261
CC026/GeniUncJ m 33.75 3.4483 40.5489 26.9511
CC032/GeniUncJ f 17.375 3.4483 24.1739 10.5761
CC032/GeniUncJ m 14.75 3.4483 21.5489 7.9511
CC040/TauUncJ f 23.625 3.4483 30.4239 16.8261
CC040/TauUncJ m 23.5 3.4483 30.2989 16.7011
CC041/TauUncJ f 4.1667 3.9818 12.0174 -3.684
CC041/TauUncJ m 4.5714 3.6864 11.8398 -2.6969
CC051/TauUncJ f 31.375 3.4483 38.1739 24.5761
CC051/TauUncJ m 21.7 3.0843 27.7811 15.6189
CC068/TauUncJ f 16.75 4.8766 26.3651 7.1349
CC068/TauUncJ m 15.5 3.4483 22.2989 8.7011


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 27.2768 2.5239 32.2531 22.3005
CC003/UncJ both 24.325 3.2714 30.775 17.875
CC004/TauUncJ both 40.625 2.4383 45.4325 35.8175
CC006/TauUncJ both 30.6875 2.9863 36.5755 24.7995
CC009/UncJ both 22.1875 2.4383 26.995 17.38
CC013/GeniUncJ both 28.75 2.9863 34.638 22.862
CC017/UncJ both 20.0 2.953 25.8222 14.1778
CC018/UncJ both 36.625 2.4383 41.4325 31.8175
CC019/TauUncJ both 19.6786 2.5239 24.6549 14.7023
CC024/GeniUncJ both 22.375 2.5239 27.3513 17.3987
CC025/GeniUncJ both 21.6667 3.1479 27.8732 15.4601
CC026/GeniUncJ both 29.1875 2.4383 33.995 24.38
CC032/GeniUncJ both 16.0625 2.4383 20.87 11.255
CC040/TauUncJ both 23.5625 2.4383 28.37 18.755
CC041/TauUncJ both 4.369 2.7131 9.7184 -0.9803
CC051/TauUncJ both 26.5375 2.3132 31.0983 21.9767
CC068/TauUncJ both 16.125 2.9863 22.013 10.237




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA