Project measure / variable:   Bolivar2   act_cued_pct

ID, description, units MPD:63921   act_cued_pct   percentage of altered context activity that occurred after cued conditioning   [%]  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - percentage of altered context activity that occurred after cued conditioning



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means37.581   % 45.018   %
Median of the strain means35.745   % 42.382   %
SD of the strain means± 20.268 ± 20.965
Coefficient of variation (CV)0.5393 0.4657
Min–max range of strain means8.6344   –   76.94   % 16.401   –   79.22   %
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3982.0375 3982.0375 8.8638 0.0032
strain 7 95911.0112 13701.573 30.4989 < 0.0001
sex:strain 7 11225.4023 1603.6289 3.5696 0.0011
Residuals 272 122195.4219 449.2479


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.6344 12.184   18 2.8717 1.411 -1.43
129S1/SvImJ m 16.401 20.316   18 4.7884 1.2387 -1.37
A/J f 76.94 34.902   18 8.2264 0.4536 24.81, 152.6 1.94
A/J m 79.22 44.397   18 10.464 0.5604 1.36, 177.25 1.63
BALB/cByJ f 22.046 14.201   18 3.3473 0.6442 3.96, 53.15 -0.77
BALB/cByJ m 23.877 11.746   18 2.7684 0.4919 5.82, 50.36 -1.01
C3H/HeJ f 47.523 18.499   18 4.3603 0.3893 18.42, 78.62 0.49
C3H/HeJ m 46.236 20.316   18 4.7885 0.4394 20.37, 102.34 0.06
C57BL/6J f 31.75 7.6917   18 1.8129 0.2423 16.19, 47.76 -0.29
C57BL/6J m 38.527 13.021   18 3.0692 0.338 18.37, 58.77 -0.31
CBA/J f 44.392 16.995   18 4.0058 0.3828 11.6, 75.71 0.34
CBA/J m 35.433 17.524   18 4.1303 0.4946 9.7, 73.19 -0.46
DBA/2J f 29.618 11.662   18 2.7487 0.3937 2.63, 49.23 -0.39
DBA/2J m 64.86 27.314   18 6.4381 0.4212 21.26, 125.13 0.95
FVB/NJ f 39.741 14.92   18 3.5167 0.3754 19.59, 71.07 0.11
FVB/NJ m 55.59 20.34   18 4.7941 0.3659 21.69, 88.17 0.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.6344 4.9958 18.4698 -1.2009
129S1/SvImJ m 16.4011 4.9958 26.2365 6.5657
A/J f 76.9406 4.9958 86.7759 67.1052
A/J m 79.2167 4.9958 89.0521 69.3813
BALB/cByJ f 22.0456 4.9958 31.8809 12.2102
BALB/cByJ m 23.8772 4.9958 33.7126 14.0418
C3H/HeJ f 47.5233 4.9958 57.3587 37.6879
C3H/HeJ m 46.2356 4.9958 56.0709 36.4002
C57BL/6J f 31.75 4.9958 41.5854 21.9146
C57BL/6J m 38.5267 4.9958 48.3621 28.6913
CBA/J f 44.3917 4.9958 54.2271 34.5563
CBA/J m 35.4328 4.9958 45.2682 25.5974
DBA/2J f 29.6178 4.9958 39.4532 19.7824
DBA/2J m 64.8561 4.9958 74.6915 55.0207
FVB/NJ f 39.7411 4.9958 49.5765 29.9057
FVB/NJ m 55.5928 4.9958 65.4282 45.7574


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 12.5178 3.5326 19.4724 5.5631
A/J both 78.0786 3.5326 85.0333 71.1239
BALB/cByJ both 22.9614 3.5326 29.9161 16.0067
C3H/HeJ both 46.8794 3.5326 53.8341 39.9248
C57BL/6J both 35.1383 3.5326 42.093 28.1837
CBA/J both 39.9122 3.5326 46.8669 32.9576
DBA/2J both 47.2369 3.5326 54.1916 40.2823
FVB/NJ both 47.6669 3.5326 54.6216 40.7123




  GWAS USING LINEAR MIXED MODELS