Project measure / variable:   Lesage1   NKT_cells

ID, description, units MPD:63510   NKT_cells   percentage of splenic lymphocytes that are NK T cells (TCRb+ CD1d+)   [%]  
Data set, strains Lesage1   CC w/par   76 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic lymphocytes that are NK T cells (TCRb+ CD1d+)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested46 strains65 strains
Mean of the strain means0.67816   % 0.57965   %
Median of the strain means0.43317   % 0.353   %
SD of the strain means± 0.92145 ± 0.81489
Coefficient of variation (CV)1.3588 1.4058
Min–max range of strain means0.026   –   5.98   % 0.03267   –   6.045   %
Mean sample size per strain2.2   mice 2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0401 0.0401 3.8548 0.0574
strain 12 6.9104 0.5759 55.3135 < 0.0001
sex:strain 12 0.1395 0.0116 1.1166 0.3774
Residuals 36 0.3748 0.0104


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.8975 0.17324   2   0.1225 0.193 0.775, 1.02 0.24
129S1/SvImJ m 0.907 0.27294   2   0.193 0.3009 0.714, 1.1 0.4
A/J f 0.9315 0.0898   2   0.0635 0.0964 0.868, 0.995 0.27
A/J m 0.7685 0.01626   2   0.0115 0.0212 0.757, 0.78 0.23
C57BL/6J f 1.43 0.11576   4 0.05788 0.0809 1.27, 1.52 0.82
C57BL/6J m 0.913 0.0   1   0.0 0.0 0.913, 0.913 0.41
CAST/EiJ f 0.067 0.02404   2   0.017 0.3588 0.05, 0.084 -0.66
CAST/EiJ m 0.0595 0.03041   2   0.0215 0.511 0.038, 0.081 -0.64
CC008/Geni m 0.23667 0.18551   3 0.1071 0.7838 0.106, 0.449 -0.42
CC010/Geni f 0.8805 0.00353553   2   0.0025 0.004 0.878, 0.883 0.22
CC010/Geni m 0.881 0.0   1   0.0 0.0 0.881, 0.881 0.37
CC012/Geni f 0.433 0.08061   2   0.057 0.1862 0.376, 0.49 -0.27
CC012/Geni m 0.395 0.10831   3 0.06253 0.2742 0.27, 0.461 -0.23
CC013/Geni m 0.99033 0.12231   3 0.07062 0.1235 0.851, 1.08 0.5
CC016/Geni m 0.91467 0.08266   3 0.04772 0.0904 0.863, 1.01 0.41
CC020/Geni f 0.481 0.0   1   0.0 0.0 0.481, 0.481 -0.21
CC020/Geni m 0.62 0.16971   2   0.12 0.2737 0.5, 0.74 0.05
CC023/Geni m 0.44633 0.16616   3 0.09593 0.3723 0.27, 0.6 -0.16
CC024/Geni f 0.4195 0.03465   2   0.0245 0.0826 0.395, 0.444 -0.28
CC024/Geni m 0.155 0.0   1   0.0 0.0 0.155, 0.155 -0.52
CC025/Geni f 0.044 0.00888819   3 0.0051316 0.202 0.034, 0.051 -0.69
CC026/Geni m 0.45567 0.0402   3 0.02321 0.0882 0.43, 0.502 -0.15
CC027/Geni f 5.98 0.0   1   0.0 0.0 5.98, 5.98 5.75
CC027/Geni m 6.045 0.86974   2   0.615 0.1439 5.43, 6.66 6.71
CC030/Geni f 0.7045 0.13364   2   0.0945 0.1897 0.61, 0.799 0.03
CC031/Geni f 0.205 0.0   1   0.0 0.0 0.205, 0.205 -0.51
CC031/Geni m 0.1975 0.01768   2   0.0125 0.0895 0.185, 0.21 -0.47
CC032/Geni m 0.44167 0.01457   3 0.00841295 0.033 0.43, 0.458 -0.17
CC033/Geni f 0.21033 0.01012   3 0.00584047 0.0481 0.204, 0.222 -0.51
CC038/Geni f 0.115 0.04384   2   0.031 0.3812 0.084, 0.146 -0.61
CC038/Geni m 0.08 0.0   1   0.0 0.0 0.08, 0.08 -0.61
CC042/Geni m 0.28 0.00781025   3 0.00450925 0.0279 0.275, 0.289 -0.37
CC043/Geni m 0.14567 0.01756   3 0.01014 0.1205 0.129, 0.164 -0.53
CC056/Geni f 0.443 0.0   1   0.0 0.0 0.443, 0.443 -0.26
CC056/Geni m 0.578 0.00848528   2   0.006 0.0147 0.572, 0.584 0.0
CC061/Geni m 0.322 0.08029   3 0.04636 0.2494 0.249, 0.408 -0.32
CIV2_FE f 0.21667 0.04077   3 0.02354 0.1882 0.183, 0.262 -0.5
DET3_GA m 0.18 0.01819   3 0.0105 0.1011 0.169, 0.201 -0.49
DONNELL_HA f 0.2635 0.03465   2   0.0245 0.1315 0.239, 0.288 -0.45
DONNELL_HA m 0.24 0.05524   3 0.0319 0.2302 0.196, 0.302 -0.42
FIV_AC m 0.0355 0.01698   4 0.00849019 0.4783 0.021, 0.06 -0.67
FUF_HE f 0.41233 0.03496   3 0.02019 0.0848 0.386, 0.452 -0.29
GALASUPREME_CE m 0.314 0.019   3 0.01097 0.0605 0.293, 0.33 -0.33
GIT_GC f 0.689 0.0   1   0.0 0.0 0.689, 0.689 0.01
GIT_GC m 0.445 0.01273   2   0.009 0.0286 0.436, 0.454 -0.17
HAX2_EF f 0.43333 0.05244   3 0.03028 0.121 0.373, 0.468 -0.27
HAZ_FE f 0.242 0.0   1   0.0 0.0 0.242, 0.242 -0.47
HAZ_FE m 0.2615 0.06718   2   0.0475 0.2569 0.214, 0.309 -0.39
HIP_GA f 1.03 0.0   1   0.0 0.0 1.03, 1.03 0.38
HIP_GA m 0.9195 0.18455   2   0.1305 0.2007 0.789, 1.05 0.42
HOE_GC f 1.83 0.0   1   0.0 0.0 1.83, 1.83 1.25
HOE_GC m 1.49 0.14142   2   0.1 0.0949 1.39, 1.59 1.12
JUD_EF m 1.0978 0.19639   4 0.0982 0.1789 0.918, 1.33 0.64
KAV_AF f 1.385 0.16263   2   0.115 0.1174 1.27, 1.5 0.77
KAV_AF m 1.26 0.0   1   0.0 0.0 1.26, 1.26 0.83
LAM_DC f 0.169 0.0   1   0.0 0.0 0.169, 0.169 -0.55
LAM_DC m 0.204 0.0   1   0.0 0.0 0.204, 0.204 -0.46
LAT_HD f 0.2006 0.04022   5 0.01798 0.2005 0.156, 0.243 -0.52
LAT_HD m 0.1555 0.02899   2   0.0205 0.1864 0.135, 0.176 -0.52
LAX_FC m 0.353 0.04101   2   0.029 0.1162 0.324, 0.382 -0.28
LEL_FH m 0.598 0.12021   2   0.085 0.201 0.513, 0.683 0.02
LIP_BG f 0.82275 0.15695   4 0.07847 0.1908 0.647, 1.02 0.16
LIP_BG m 0.571 0.0   1   0.0 0.0 0.571, 0.571 -0.01
LIV_DA f 0.356 0.0   1   0.0 0.0 0.356, 0.356 -0.35
LIV_DA m 0.23 0.01414   2   0.01 0.0615 0.22, 0.24 -0.43
LOD_AE f 0.68833 0.0691   3 0.03989 0.1004 0.611, 0.744 0.01
LOM_BG m 0.03267 0.00251661   3 0.00145297 0.077 0.03, 0.035 -0.67
LOT_FC f 0.77433 0.06603   3 0.03812 0.0853 0.718, 0.847 0.1
LOT_FC m 0.4165 0.01344   2   0.0095 0.0323 0.407, 0.426 -0.2
LOX_GF m 0.58467 0.04793   3 0.02767 0.082 0.556, 0.64 0.01
LUF_AD m 0.7844 0.11683   5 0.05225 0.1489 0.614, 0.897 0.25
LUG_EH m 0.222 0.02265   3 0.01308 0.102 0.201, 0.246 -0.44
LUS_AH f 0.04867 0.0023094   3 0.00133333 0.0475 0.046, 0.05 -0.68
LUV_DG m 0.4215 0.02969   4 0.01485 0.0704 0.388, 0.447 -0.19
LUZ_FH f 1.435 0.13435   2   0.095 0.0936 1.34, 1.53 0.82
LUZ_FH m 1.68 0.0   1   0.0 0.0 1.68, 1.68 1.35
MERCURI_HF m 0.26067 0.02601   3 0.01501 0.0998 0.235, 0.287 -0.39
NOD/ShiLtJ f 0.755 0.02546   2   0.018 0.0337 0.737, 0.773 0.08
NOD/ShiLtJ m 0.6985 0.00070711   2   0.0005 0.001 0.698, 0.699 0.15
NZO/HlLtJ f 0.8165 0.20294   2   0.1435 0.2485 0.673, 0.96 0.15
NZO/HlLtJ m 0.7095 0.18597   2   0.1315 0.2621 0.578, 0.841 0.16
PAT_CD m 0.382 0.0365   3 0.02107 0.0955 0.34, 0.406 -0.24
PEF_EC f 0.328 0.04551   3 0.02627 0.1387 0.282, 0.373 -0.38
PEF_EC m 0.30533 0.06101   3 0.03522 0.1998 0.235, 0.344 -0.34
POH_DC f 0.76133 0.17295   3 0.09985 0.2272 0.566, 0.895 0.09
PWK/PhJ f 0.026 0.0   2   0.0 0.0 0.026, 0.026 -0.71
PWK/PhJ m 0.039 0.00282843   2   0.002 0.0725 0.037, 0.041 -0.66
SEH_AH f 1.56 0.0   1   0.0 0.0 1.56, 1.56 0.96
SEH_AH m 2.08 0.0   1   0.0 0.0 2.08, 2.08 1.84
STUCKY_HF f 0.38467 0.09967   3 0.05755 0.2591 0.279, 0.477 -0.32
STUCKY_HF m 0.214 0.0   1   0.0 0.0 0.214, 0.214 -0.45
VIT_ED f 0.103 0.00655744   3 0.00378594 0.0637 0.097, 0.11 -0.62
VUX2_HF m 0.268 0.04349   3 0.02511 0.1623 0.239, 0.318 -0.38
WAD f 0.06433 0.00981495   3 0.00566667 0.1526 0.053, 0.07 -0.67
WSB/EiJ f 1.1475 0.34295   2   0.2425 0.2989 0.905, 1.39 0.51
WSB/EiJ m 1.135 0.02121   2   0.015 0.0187 1.12, 1.15 0.68
XAD8_BG f 0.084 0.0   1   0.0 0.0 0.084, 0.084 -0.64
XAD8_BG m 0.07333 0.0080829   3 0.00466667 0.1102 0.066, 0.082 -0.62
XAH3_GH m 0.14367 0.02743   3 0.01584 0.1909 0.124, 0.175 -0.54
XAS4_AF m 1.5033 0.10693   3 0.06173 0.0711 1.38, 1.57 1.13
XAV_AH m 0.074 0.01769   3 0.01021 0.2391 0.055, 0.09 -0.62
XAW2_CD m 0.177 0.07212   2   0.051 0.4075 0.126, 0.228 -0.49
XEB2_AG f 0.16067 0.01914   3 0.01105 0.1191 0.145, 0.182 -0.56
XEB2_AG m 0.12467 0.00929157   3 0.00536449 0.0745 0.114, 0.131 -0.56
XEB_AF f 0.059 0.02121   2   0.015 0.3595 0.044, 0.074 -0.67
XEB_AF m 0.06 0.0   1   0.0 0.0 0.06, 0.06 -0.64
XEQ_EH m 0.41333 0.03848   3 0.02221 0.0931 0.369, 0.438 -0.2
XXEN2_DC m 0.284 0.04293   3 0.02479 0.1512 0.238, 0.323 -0.36
XXEN3_DC f 0.707 0.0   1   0.0 0.0 0.707, 0.707 0.03
XXEN3_DC m 0.296 0.0   1   0.0 0.0 0.296, 0.296 -0.35
YOX_DE m 0.107 0.0072111   3 0.00416333 0.0674 0.101, 0.115 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.8975 0.0721 1.0438 0.7512
129S1/SvImJ m 0.907 0.0721 1.0533 0.7607
A/J f 0.9315 0.0721 1.0778 0.7852
A/J m 0.7685 0.0721 0.9148 0.6222
CAST/EiJ f 0.067 0.0721 0.2133 -0.0793
CAST/EiJ m 0.0595 0.0721 0.2058 -0.0868
CC012/Geni f 0.433 0.0721 0.5793 0.2867
CC012/Geni m 0.395 0.0589 0.5145 0.2755
DONNELL_HA f 0.2635 0.0721 0.4098 0.1172
DONNELL_HA m 0.24 0.0589 0.3595 0.1205
LAT_HD f 0.2006 0.0456 0.2931 0.1081
LAT_HD m 0.1555 0.0721 0.3018 0.0092
LOT_FC f 0.7743 0.0589 0.8938 0.6549
LOT_FC m 0.4165 0.0721 0.5628 0.2702
NOD/ShiLtJ f 0.755 0.0721 0.9013 0.6087
NOD/ShiLtJ m 0.6985 0.0721 0.8448 0.5522
NZO/HlLtJ f 0.8165 0.0721 0.9628 0.6702
NZO/HlLtJ m 0.7095 0.0721 0.8558 0.5632
PEF_EC f 0.328 0.0589 0.4475 0.2085
PEF_EC m 0.3053 0.0589 0.4248 0.1859
PWK/PhJ f 0.026 0.0721 0.1723 -0.1203
PWK/PhJ m 0.039 0.0721 0.1853 -0.1073
WSB/EiJ f 1.1475 0.0721 1.2938 1.0012
WSB/EiJ m 1.135 0.0721 1.2813 0.9887
XEB2_AG f 0.1607 0.0589 0.2801 0.0412
XEB2_AG m 0.1247 0.0589 0.2441 0.0052


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.9022 0.051 1.0057 0.7988
A/J both 0.85 0.051 0.9535 0.7465
CAST/EiJ both 0.0632 0.051 0.1667 -0.0402
CC012/Geni both 0.414 0.0466 0.5085 0.3195
DONNELL_HA both 0.2517 0.0466 0.3462 0.1573
LAT_HD both 0.1781 0.0427 0.2646 0.0915
LOT_FC both 0.5954 0.0466 0.6899 0.501
NOD/ShiLtJ both 0.7267 0.051 0.8302 0.6233
NZO/HlLtJ both 0.763 0.051 0.8665 0.6595
PEF_EC both 0.3167 0.0417 0.4011 0.2322
PWK/PhJ both 0.0325 0.051 0.136 -0.071
WSB/EiJ both 1.1412 0.051 1.2447 1.0378
XEB2_AG both 0.1427 0.0417 0.2271 0.0582




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA