Project measure / variable:   Lesage1   CD27_pos_CD11b_pos

ID, description, units MPD:63506   CD27_pos_CD11b_pos   percentage of splenic NK cells that are CD27+ CD11b+   [%]  
Data set, strains Lesage1   CC w/par   76 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic NK cells that are CD27+ CD11b+



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means13.985   % 14.04   %
Median of the strain means9.48   % 9.6035   %
SD of the strain means± 11.124 ± 10.907
Coefficient of variation (CV)0.7954 0.7769
Min–max range of strain means1.615   –   51.45   % 0.876   –   46.1   %
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.3041 3.3041 0.1002 0.7534
strain 11 11072.6104 1006.6009 30.5274 < 0.0001
sex:strain 11 82.9078 7.5371 0.2286 0.9939
Residuals 36 1187.0514 32.9736


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 24.75 3.4648   2   2.45 0.14 22.3, 27.2 0.97
129S1/SvImJ m 24.75 1.4849   2   1.05 0.06 23.7, 25.8 0.98
A/J f 20.75 2.8991   2   2.05 0.1397 18.7, 22.8 0.61
A/J m 24.4 1.4142   2   1.0 0.058 23.4, 25.4 0.95
C57BL/6J f 28.5 7.9259   4 3.963 0.2781 20.2, 36.9 1.3
C57BL/6J m 35.0 0.0   1   0.0 0.0 35.0, 35.0 1.92
CAST/EiJ f 51.45 3.182   2   2.25 0.0618 49.2, 53.7 3.37
CAST/EiJ m 46.1 2.9698   2   2.1 0.0644 44.0, 48.2 2.94
CC008/Geni m 2.17 0.52326   2   0.37 0.2411 1.8, 2.54 -1.09
CC010/Geni f 30.0 7.4953   2   5.3 0.2498 24.7, 35.3 1.44
CC010/Geni m 26.4 0.0   1   0.0 0.0 26.4, 26.4 1.13
CC012/Geni f 15.507 13.678   3 7.8972 0.8821 7.45, 31.3 0.14
CC012/Geni m 15.034 13.0   5 5.8139 0.8647 4.79, 29.9 0.09
CC013/Geni m 12.243 2.633   3 1.5202 0.2151 9.23, 14.1 -0.16
CC016/Geni m 12.377 3.6562   3 2.1109 0.2954 9.53, 16.5 -0.15
CC020/Geni f 9.18 0.0   1   0.0 0.0 9.18, 9.18 -0.43
CC020/Geni m 12.2 1.4142   2   1.0 0.1159 11.2, 13.2 -0.17
CC023/Geni m 21.0 2.3643   3 1.365 0.1126 19.3, 23.7 0.64
CC024/Geni f 7.25 1.0748   2   0.76 0.1482 6.49, 8.01 -0.61
CC024/Geni m 4.04 0.0   1   0.0 0.0 4.04, 4.04 -0.92
CC025/Geni f 24.2 2.7221   3 1.5716 0.1125 21.3, 26.7 0.92
CC026/Geni m 8.7867 0.53715   3 0.31013 0.0611 8.4, 9.4 -0.48
CC027/Geni f 2.53 0.0   1   0.0 0.0 2.53, 2.53 -1.03
CC027/Geni m 4.0 0.25456   2   0.18 0.0636 3.82, 4.18 -0.92
CC030/Geni f 6.46 2.5314   2   1.79 0.3919 4.67, 8.25 -0.68
CC031/Geni f 20.9 0.0   1   0.0 0.0 20.9, 20.9 0.62
CC031/Geni m 21.45 0.49497   2   0.35 0.0231 21.1, 21.8 0.68
CC032/Geni m 4.8467 0.54885   3 0.31688 0.1132 4.25, 5.33 -0.84
CC033/Geni f 4.7733 0.22279   3 0.12863 0.0467 4.63, 5.03 -0.83
CC038/Geni f 6.545 0.09192   2   0.065 0.014 6.48, 6.61 -0.67
CC038/Geni m 6.51 0.0   1   0.0 0.0 6.51, 6.51 -0.69
CC042/Geni m 6.8133 0.58312   3 0.33667 0.0856 6.14, 7.15 -0.66
CC043/Geni m 18.6 1.9468   3 1.124 0.1047 16.4, 20.1 0.42
CC056/Geni f 3.37 0.0   1   0.0 0.0 3.37, 3.37 -0.95
CC056/Geni m 2.915 0.44548   2   0.315 0.1528 2.6, 3.23 -1.02
CC061/Geni m 4.4867 0.97762   3 0.56443 0.2179 3.42, 5.34 -0.88
CIV2_FE f 17.967 2.0306   3 1.1724 0.113 16.6, 20.3 0.36
DET3_GA m 23.0 2.5515   3 1.4731 0.1109 20.5, 25.6 0.82
DONNELL_HA f 5.14 1.6688   2   1.18 0.3247 3.96, 6.32 -0.8
DONNELL_HA m 3.86 1.4796   3 0.85424 0.3833 2.68, 5.52 -0.93
FIV_AC m 8.3825 5.7008   4 2.8504 0.6801 3.28, 14.7 -0.52
FUF_HE f 37.967 2.8676   3 1.6556 0.0755 35.3, 41.0 2.16
GALASUPREME_CE m 6.9933 1.655   3 0.95552 0.2367 5.34, 8.65 -0.65
GIT_GC f 3.53 0.0   1   0.0 0.0 3.53, 3.53 -0.94
GIT_GC m 4.045 0.71418   2   0.505 0.1766 3.54, 4.55 -0.92
HAX2_EF f 16.3 2.2869   3 1.3204 0.1403 14.6, 18.9 0.21
HAZ_FE f 9.48 0.0   1   0.0 0.0 9.48, 9.48 -0.4
HAZ_FE m 9.19 1.1172   2   0.79 0.1216 8.4, 9.98 -0.44
HIP_GA f 8.9 0.0   1   0.0 0.0 8.9, 8.9 -0.46
HIP_GA m 12.6 0.28284   2   0.2 0.0224 12.4, 12.8 -0.13
HOE_GC f 20.3 0.0   1   0.0 0.0 20.3, 20.3 0.57
HOE_GC m 17.0 2.687   2   1.9 0.1581 15.1, 18.9 0.27
JUD_EF m 6.6825 0.3312   4 0.1656 0.0496 6.27, 6.97 -0.67
KAV_AF f 1.615 0.71418   2   0.505 0.4422 1.11, 2.12 -1.11
KAV_AF m 0.876 0.0   1   0.0 0.0 0.876, 0.876 -1.21
LAM_DC f 13.0 0.0   1   0.0 0.0 13.0, 13.0 -0.09
LAM_DC m 14.4 6.364   2   4.5 0.4419 9.9, 18.9 0.03
LAT_HD f 6.992 3.5656   5 1.5946 0.5099 2.75, 11.2 -0.63
LAT_HD m 4.215 0.43134   2   0.305 0.1023 3.91, 4.52 -0.9
LAX_FC f 10.4 0.0   1   0.0 0.0 10.4, 10.4 -0.32
LAX_FC m 8.4 0.0   1   0.0 0.0 8.4, 8.4 -0.52
LEL_FH m 15.1 1.4142   2   1.0 0.0937 14.1, 16.1 0.1
LIP_BG f 6.095 1.236   4 0.61801 0.2028 4.69, 7.65 -0.71
LIP_BG m 8.14 0.0   1   0.0 0.0 8.14, 8.14 -0.54
LIV_DA f 6.45 0.0   1   0.0 0.0 6.45, 6.45 -0.68
LIV_DA m 6.17 0.25456   2   0.18 0.0413 5.99, 6.35 -0.72
LOD_AE f 11.907 2.7518   3 1.5887 0.2311 9.02, 14.5 -0.19
LOM_BG m 18.633 5.4638   3 3.1545 0.2932 14.1, 24.7 0.42
LOT_FC f 5.6933 1.9392   6 0.79166 0.3406 3.66, 7.66 -0.75
LOX_GF m 37.7 3.6042   3 2.0809 0.0956 34.2, 41.4 2.17
LUF_AD m 33.34 2.4724   5 1.1057 0.0742 30.8, 36.5 1.77
LUG_EH m 34.9 2.0952   3 1.2097 0.06 32.6, 36.7 1.91
LUS_AH f 8.4367 1.066   3 0.61548 0.1264 7.27, 9.36 -0.5
LUV_DG m 2.85 0.35935   4 0.17968 0.1261 2.45, 3.32 -1.03
LUZ_FH f 6.7225 3.636   4 1.818 0.5409 4.27, 12.0 -0.65
LUZ_FH m 6.97 0.0   1   0.0 0.0 6.97, 6.97 -0.65
MERCURI_HF m 13.2 0.7   3 0.40415 0.053 12.4, 13.7 -0.08
NOD/ShiLtJ f 37.75 1.3435   2   0.95 0.0356 36.8, 38.7 2.14
NOD/ShiLtJ m 41.9 0.98995   2   0.7 0.0236 41.2, 42.6 2.55
NZO/HlLtJ f 11.5 1.9799   2   1.4 0.1722 10.1, 12.9 -0.22
NZO/HlLtJ m 9.18 0.45255   2   0.32 0.0493 8.86, 9.5 -0.45
PAT_CD m 21.3 1.0149   3 0.58595 0.0476 20.2, 22.2 0.67
PEF_EC f 4.1767 0.47438   3 0.27388 0.1136 3.64, 4.54 -0.88
PEF_EC m 3.3433 0.65516   3 0.37826 0.196 2.68, 3.99 -0.98
POH_DC f 18.667 0.47258   3 0.27285 0.0253 18.3, 19.2 0.42
PWK/PhJ f 27.4 2.1213   2   1.5 0.0774 25.9, 28.9 1.21
PWK/PhJ m 26.35 3.3234   2   2.35 0.1261 24.0, 28.7 1.13
SEH_AH f 6.92 0.0   1   0.0 0.0 6.92, 6.92 -0.64
SEH_AH m 6.1325 2.2178   4 1.1089 0.3616 4.69, 9.38 -0.72
STUCKY_HF f 4.5067 0.61256   3 0.35366 0.1359 4.09, 5.21 -0.85
STUCKY_HF m 7.48 0.0   1   0.0 0.0 7.48, 7.48 -0.6
VIT_ED f 13.033 3.6116   3 2.0851 0.2771 10.8, 17.2 -0.09
VUX2_HF m 10.017 7.954   3 4.5922 0.7941 5.3, 19.2 -0.37
WAD f 7.87 0.98975   3 0.57143 0.1258 6.97, 8.93 -0.55
WSB/EiJ f 21.8 2.687   2   1.9 0.1233 19.9, 23.7 0.7
WSB/EiJ m 20.05 1.9092   2   1.35 0.0952 18.7, 21.4 0.55
XAD8_BG f 13.6 0.0   1   0.0 0.0 13.6, 13.6 -0.03
XAD8_BG m 11.867 1.1547   3 0.66667 0.0973 11.2, 13.2 -0.2
XAH3_GH m 30.733 3.2021   3 1.8487 0.1042 27.6, 34.0 1.53
XAS4_AF m 2.39 0.71141   3 0.41073 0.2977 1.63, 3.04 -1.07
XAV_AH m 3.2133 0.43844   3 0.25314 0.1364 2.81, 3.68 -0.99
XAW2_CD m 9.18 0.14142   2   0.1 0.0154 9.08, 9.28 -0.45
XEB2_AG f 4.1267 0.42665   3 0.24633 0.1034 3.68, 4.53 -0.89
XEB2_AG m 0.90667 0.19554   3 0.11289 0.2157 0.709, 1.1 -1.2
XEB_AF f 2.0 1.0041   2   0.71 0.502 1.29, 2.71 -1.08
XEB_AF m 9.15 0.0   1   0.0 0.0 9.15, 9.15 -0.45
XEQ_EH m 19.4 3.0265   3 1.7474 0.156 17.0, 22.8 0.49
XXEN2_DC m 28.2 2.4062   3 1.3892 0.0853 25.7, 30.5 1.3
XXEN3_DC f 30.9 0.0   1   0.0 0.0 30.9, 30.9 1.52
XXEN3_DC m 19.0 0.0   1   0.0 0.0 19.0, 19.0 0.45
YOX_DE m 8.0033 0.9349   3 0.53976 0.1168 7.0, 8.85 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 24.75 4.0604 32.9849 16.5151
129S1/SvImJ m 24.75 4.0604 32.9849 16.5151
A/J f 20.75 4.0604 28.9849 12.5151
A/J m 24.4 4.0604 32.6349 16.1651
CAST/EiJ f 51.45 4.0604 59.6849 43.2151
CAST/EiJ m 46.1 4.0604 54.3349 37.8651
CC012/Geni f 15.5067 3.3153 22.2304 8.7829
CC012/Geni m 15.034 2.568 20.2422 9.8258
DONNELL_HA f 5.14 4.0604 13.3749 -3.0949
DONNELL_HA m 3.86 3.3153 10.5837 -2.8637
LAT_HD f 6.992 2.568 12.2002 1.7838
LAT_HD m 4.215 4.0604 12.4499 -4.0199
NOD/ShiLtJ f 37.75 4.0604 45.9849 29.5151
NOD/ShiLtJ m 41.9 4.0604 50.1349 33.6651
NZO/HlLtJ f 11.5 4.0604 19.7349 3.2651
NZO/HlLtJ m 9.18 4.0604 17.4149 0.9451
PEF_EC f 4.1767 3.3153 10.9004 -2.5471
PEF_EC m 3.3433 3.3153 10.0671 -3.3804
PWK/PhJ f 27.4 4.0604 35.6349 19.1651
PWK/PhJ m 26.35 4.0604 34.5849 18.1151
WSB/EiJ f 21.8 4.0604 30.0349 13.5651
WSB/EiJ m 20.05 4.0604 28.2849 11.8151
XEB2_AG f 4.1267 3.3153 10.8504 -2.5971
XEB2_AG m 0.9067 3.3153 7.6304 -5.8171


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 24.75 2.8711 30.5729 18.9271
A/J both 22.575 2.8711 28.3979 16.7521
CAST/EiJ both 48.775 2.8711 54.5979 42.9521
CC012/Geni both 15.2703 2.0968 19.5228 11.0179
DONNELL_HA both 4.5 2.621 9.8156 -0.8156
LAT_HD both 5.6035 2.4022 10.4753 0.7317
NOD/ShiLtJ both 39.825 2.8711 45.6479 34.0021
NZO/HlLtJ both 10.34 2.8711 16.1629 4.5171
PEF_EC both 3.76 2.3443 8.5144 -0.9944
PWK/PhJ both 26.875 2.8711 32.6979 21.0521
WSB/EiJ both 20.925 2.8711 26.7479 15.1021
XEB2_AG both 2.5167 2.3443 7.2711 -2.2377




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA