Project measure / variable:   Bolivar1   LF_time_pct_d3

ID, description, units MPD:63454   LF_time_pct_d3   percentage of time spent in left-front of arena, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in left-front of arena, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means12.806   % 12.805   %
Median of the strain means11.688   % 10.611   %
SD of the strain means± 4.5246 ± 5.1224
Coefficient of variation (CV)0.3533 0.4
Min–max range of strain means7.0   –   19.65   % 7.7194   –   23.464   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0001 0.0001 0.0 0.9995
strain 9 2129.2434 236.5826 1.3107 0.2324
sex:strain 9 2915.5676 323.952 1.7948 0.0705
Residuals 220 39709.543 180.4979


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 18.964 24.671   12 7.1218 1.3009 1.36
129S1/SvImJ m 18.317 27.234   12 7.8617 1.4868 1.08
A/J f 11.892 9.4655   12 2.7325 0.796 -0.2
A/J m 9.0361 5.6272   12 1.6244 0.6227 -0.74
B6129SF1/J f 13.0 11.544   12 3.3323 0.888 1.833333333, 39.63333333 0.04
B6129SF1/J m 14.614 10.615   12 3.0643 0.7264 5.866666667, 44.96666667 0.35
B6C3F1/J f 11.483 4.3578   12 1.258 0.3795 6.933333333, 18.9 -0.29
B6C3F1/J m 10.817 2.8243   12 0.81532 0.2611 6.933333333, 17.66666667 -0.39
BALB/cByJ f 8.1167 3.2692   12 0.94373 0.4028 2.0, 13.4 -1.04
BALB/cByJ m 10.406 5.9937   12 1.7302 0.576 2.233333333, 21.56666667 -0.47
C3H/HeJ f 19.65 15.117   12 4.3639 0.7693 5.733333333, 49.06666667 1.51
C3H/HeJ m 7.7194 3.5059   12 1.0121 0.4542 2.666666667, 14.5 -0.99
C57BL/6J f 10.117 6.7821   12 1.9578 0.6704 4.166666667, 28.63333333 -0.59
C57BL/6J m 15.55 9.9068   12 2.8598 0.6371 2.433333333, 33.9 0.54
CBA/J f 17.883 25.402   12 7.333 1.4204 4.2, 95.13333333 1.12
CBA/J m 7.7306 2.849   12 0.82244 0.3685 4.266666667, 12.6 -0.99
DBA/2J f 9.95 3.8867   12 1.122 0.3906 0.433333333, 15.7 -0.63
DBA/2J m 23.464 27.262   12 7.8697 1.1619 1.466666667, 92.83333333 2.08
FVB/NJ f 7.0 3.3496   12 0.96695 0.4785 1.966666667, 11.8 -1.28
FVB/NJ m 10.392 3.3163   12 0.95734 0.3191 6.3, 18.2 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 18.9639 3.8783 26.6073 11.3204
129S1/SvImJ m 18.3167 3.8783 25.9601 10.6732
A/J f 11.8917 3.8783 19.5351 4.2482
A/J m 9.0361 3.8783 16.6796 1.3927
B6129SF1/J f 13.0 3.8783 20.6434 5.3566
B6129SF1/J m 14.6139 3.8783 22.2573 6.9704
B6C3F1/J f 11.4833 3.8783 19.1268 3.8399
B6C3F1/J m 10.8167 3.8783 18.4601 3.1732
BALB/cByJ f 8.1167 3.8783 15.7601 0.4732
BALB/cByJ m 10.4056 3.8783 18.049 2.7621
C3H/HeJ f 19.65 3.8783 27.2934 12.0066
C3H/HeJ m 7.7194 3.8783 15.3629 0.076
C57BL/6J f 10.1167 3.8783 17.7601 2.4732
C57BL/6J m 15.55 3.8783 23.1934 7.9066
CBA/J f 17.8833 3.8783 25.5268 10.2399
CBA/J m 7.7306 3.8783 15.374 0.0871
DBA/2J f 9.95 3.8783 17.5934 2.3066
DBA/2J m 23.4639 3.8783 31.1073 15.8204
FVB/NJ f 7.0 3.8783 14.6434 -0.6434
FVB/NJ m 10.3917 3.8783 18.0351 2.7482


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.6403 2.7424 24.045 13.2355
A/J both 10.4639 2.7424 15.8686 5.0592
B6129SF1/J both 13.8069 2.7424 19.2117 8.4022
B6C3F1/J both 11.15 2.7424 16.5547 5.7453
BALB/cByJ both 9.2611 2.7424 14.6658 3.8564
C3H/HeJ both 13.6847 2.7424 19.0895 8.28
C57BL/6J both 12.8333 2.7424 18.2381 7.4286
CBA/J both 12.8069 2.7424 18.2117 7.4022
DBA/2J both 16.7069 2.7424 22.1117 11.3022
FVB/NJ both 8.6958 2.7424 14.1006 3.2911




  GWAS USING LINEAR MIXED MODELS