Project measure / variable:   Bolivar1   center_time_pct_d3

ID, description, units MPD:63451   center_time_pct_d3   percentage of time spent in center, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in center, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means6.4622   % 8.8459   %
Median of the strain means6.6195   % 8.2389   %
SD of the strain means± 2.644 ± 5.6123
Coefficient of variation (CV)0.4092 0.6345
Min–max range of strain means3.2722   –   11.572   % 1.625   –   18.294   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 340.8961 340.8961 11.8265 0.0007
strain 9 2255.065 250.5628 8.6926 < 0.0001
sex:strain 9 1901.756 211.3062 7.3307 < 0.0001
Residuals 220 6341.4745 28.8249


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.8389 4.091   12 1.181 0.8454 -0.61
129S1/SvImJ m 1.9778 2.969   12 0.85707 1.5012 -1.22
A/J f 4.0139 4.5875   12 1.3243 1.1429 -0.93
A/J m 5.3611 5.6227   12 1.6231 1.0488 -0.62
B6129SF1/J f 3.2722 4.7986   12 1.3852 1.4665 -1.21
B6129SF1/J m 8.0389 5.2365   12 1.5117 0.6514 0.3, 17.06666667 -0.14
B6C3F1/J f 7.8306 5.5353   12 1.5979 0.7069 0.266666667, 16.7 0.52
B6C3F1/J m 8.4389 5.11   12 1.4751 0.6055 -0.07
BALB/cByJ f 11.572 7.9402   12 2.2921 0.6861 1.166666667, 23.5 1.93
BALB/cByJ m 10.511 5.9333   12 1.7128 0.5645 1.5, 22.83333333 0.3
C3H/HeJ f 6.8806 5.1358   12 1.4826 0.7464 0.233333333, 17.66666667 0.16
C3H/HeJ m 12.631 7.5732   12 2.1862 0.5996 2.366666667, 33.36666667 0.67
C57BL/6J f 6.3583 3.4325   12 0.99087 0.5398 2.833333333, 12.46666667 -0.04
C57BL/6J m 5.4389 4.1512   12 1.1983 0.7632 0.333333333, 15.06666667 -0.61
CBA/J f 3.4778 4.5994   12 1.3277 1.3225 -1.13
CBA/J m 18.294 4.6936   12 1.3549 0.2566 12.56666667, 26.66666667 1.68
DBA/2J f 7.4556 4.6549   12 1.3438 0.6244 0.266666667, 13.63333333 0.38
DBA/2J m 1.625 3.349   12 0.96676 2.0609 -1.29
FVB/NJ f 8.9222 7.5318   12 2.1742 0.8442 0.033333333, 22.2 0.93
FVB/NJ m 16.142 6.8773   12 1.9853 0.4261 4.366666667, 26.5 1.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.8389 1.5499 7.8934 1.7844
129S1/SvImJ m 1.9778 1.5499 5.0323 -1.0767
A/J f 4.0139 1.5499 7.0684 0.9594
A/J m 5.3611 1.5499 8.4156 2.3066
B6129SF1/J f 3.2722 1.5499 6.3267 0.2177
B6129SF1/J m 8.0389 1.5499 11.0934 4.9844
B6C3F1/J f 7.8306 1.5499 10.885 4.7761
B6C3F1/J m 8.4389 1.5499 11.4934 5.3844
BALB/cByJ f 11.5722 1.5499 14.6267 8.5177
BALB/cByJ m 10.5111 1.5499 13.5656 7.4566
C3H/HeJ f 6.8806 1.5499 9.935 3.8261
C3H/HeJ m 12.6306 1.5499 15.685 9.5761
C57BL/6J f 6.3583 1.5499 9.4128 3.3039
C57BL/6J m 5.4389 1.5499 8.4934 2.3844
CBA/J f 3.4778 1.5499 6.5323 0.4233
CBA/J m 18.2944 1.5499 21.3489 15.24
DBA/2J f 7.4556 1.5499 10.51 4.4011
DBA/2J m 1.625 1.5499 4.6795 -1.4295
FVB/NJ f 8.9222 1.5499 11.9767 5.8677
FVB/NJ m 16.1417 1.5499 19.1961 13.0872


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.4083 1.0959 5.5682 1.2485
A/J both 4.6875 1.0959 6.8473 2.5277
B6129SF1/J both 5.6556 1.0959 7.8154 3.4957
B6C3F1/J both 8.1347 1.0959 10.2946 5.9749
BALB/cByJ both 11.0417 1.0959 13.2015 8.8818
C3H/HeJ both 9.7556 1.0959 11.9154 7.5957
C57BL/6J both 5.8986 1.0959 8.0585 3.7388
CBA/J both 10.8861 1.0959 13.046 8.7263
DBA/2J both 4.5403 1.0959 6.7001 2.3804
FVB/NJ both 12.5319 1.0959 14.6918 10.3721




  GWAS USING LINEAR MIXED MODELS