Project measure / variable:   Bolivar1   margin_time_pct_d2

ID, description, units MPD:63444   margin_time_pct_d2   percentage of time spent in periphery, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in periphery, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means91.58   % 89.26   %
Median of the strain means91.16   % 90.73   %
SD of the strain means± 2.7286 ± 5.9972
Coefficient of variation (CV)0.0298 0.0672
Min–max range of strain means88.04   –   95.89   % 77.01   –   96.5   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 322.944 322.944 8.2402 0.0045
strain 9 2650.5139 294.5015 7.5145 < 0.0001
sex:strain 9 2038.7287 226.5254 5.78 < 0.0001
Residuals 220 8622.0576 39.1912


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 90.81 4.6328   12 1.3374 0.051 82.16666667, 97.6 -0.28
129S1/SvImJ m 92.84 10.48   12 3.0252 0.1129 69.96666667, 99.83333333 0.6
A/J f 95.89 5.2779   12 1.5236 0.055 85.86666667, 100.0 1.58
A/J m 95.0 7.7187   12 2.2282 0.0813 72.1, 100.0 0.96
B6129SF1/J f 94.83 5.0393   12 1.4547 0.0531 83.7, 100.0 1.19
B6129SF1/J m 91.02 4.5746   12 1.3206 0.0503 83.4, 98.93333333 0.29
B6C3F1/J f 89.42 4.9968   12 1.4424 0.0559 80.66666667, 99.4 -0.79
B6C3F1/J m 89.54 4.3088   12 1.2439 0.0481 82.43333333, 95.63333333 0.05
BALB/cByJ f 88.04 8.5108   12 2.4569 0.0967 73.26666667, 99.26666667 -1.3
BALB/cByJ m 82.38 6.7555   12 1.9501 0.082 71.4, 93.13333333 -1.15
C3H/HeJ f 90.26 5.1709   12 1.4927 0.0573 84.3, 99.86666667 -0.48
C3H/HeJ m 90.45 2.6368   12 0.76117 0.0292 84.46666667, 94.2 0.2
C57BL/6J f 91.97 2.3274   12 0.67187 0.0253 87.56666667, 95.56666667 0.14
C57BL/6J m 92.36 4.51   12 1.3019 0.0488 84.86666667, 97.63333333 0.52
CBA/J f 94.56 5.3529   12 1.5452 0.0566 81.06666667, 99.93333333 1.09
CBA/J m 77.01 9.5355   12 2.7527 0.1238 59.36666667, 85.83333333 -2.04
DBA/2J f 91.52 5.6717   12 1.6373 0.062 82.86666667, 99.4 -0.02
DBA/2J m 96.5 3.8565   12 1.1133 0.04 88.3, 100.0 1.21
FVB/NJ f 88.53 9.0645   12 2.6167 0.1024 75.2, 100.0 -1.12
FVB/NJ m 85.53 6.996   12 2.0196 0.0818 71.26666667, 98.6 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 90.8056 1.8072 94.3672 87.2439
129S1/SvImJ m 92.8361 1.8072 96.3977 89.2745
A/J f 95.8889 1.8072 99.4505 92.3273
A/J m 94.9972 1.8072 98.5588 91.4356
B6129SF1/J f 94.8306 1.8072 98.3922 91.2689
B6129SF1/J m 91.0167 1.8072 94.5783 87.455
B6C3F1/J f 89.4167 1.8072 92.9783 85.855
B6C3F1/J m 89.5361 1.8072 93.0977 85.9745
BALB/cByJ f 88.0389 1.8072 91.6005 84.4773
BALB/cByJ m 82.3806 1.8072 85.9422 78.8189
C3H/HeJ f 90.2556 1.8072 93.8172 86.6939
C3H/HeJ m 90.4472 1.8072 94.0088 86.8856
C57BL/6J f 91.9667 1.8072 95.5283 88.405
C57BL/6J m 92.3639 1.8072 95.9255 88.8023
CBA/J f 94.5611 1.8072 98.1227 90.9995
CBA/J m 77.0083 1.8072 80.57 73.4467
DBA/2J f 91.5194 1.8072 95.0811 87.9578
DBA/2J m 96.5 1.8072 100.0616 92.9384
FVB/NJ f 88.5278 1.8072 92.0894 84.9662
FVB/NJ m 85.525 1.8072 89.0866 81.9634


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 91.8208 1.2779 94.3393 89.3024
A/J both 95.4431 1.2779 97.9615 92.9246
B6129SF1/J both 92.9236 1.2779 95.4421 90.4052
B6C3F1/J both 89.4764 1.2779 91.9948 86.9579
BALB/cByJ both 85.2097 1.2779 87.7282 82.6913
C3H/HeJ both 90.3514 1.2779 92.8698 87.8329
C57BL/6J both 92.1653 1.2779 94.6837 89.6468
CBA/J both 85.7847 1.2779 88.3032 83.2663
DBA/2J both 94.0097 1.2779 96.5282 91.4913
FVB/NJ both 87.0264 1.2779 89.5448 84.5079




  GWAS USING LINEAR MIXED MODELS