Project measure / variable:   Bolivar1   rest_time_pct_d2

ID, description, units MPD:63411   rest_time_pct_d2   percentage of time spent resting, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent resting, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means66.3   % 64.14   %
Median of the strain means66.57   % 61.93   %
SD of the strain means± 3.904 ± 8.8328
Coefficient of variation (CV)0.0589 0.1377
Min–max range of strain means59.84   –   70.79   % 48.375   –   77.51   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 279.3603 279.3603 3.3603 0.0681
strain 9 4687.8612 520.8735 6.2654 < 0.0001
sex:strain 9 5384.5356 598.2817 7.1965 < 0.0001
Residuals 220 18289.7161 83.1351


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 64.24 14.112   12 4.0739 0.2197 40.23333333, 90.96666667 -0.53
129S1/SvImJ m 77.51 11.308   12 3.2643 0.1459 56.56666667, 96.2 1.51
A/J f 70.79 9.0697   12 2.6182 0.1281 56.53333333, 87.5 1.15
A/J m 73.71 8.9237   12 2.5761 0.1211 62.2, 90.86666667 1.08
B6129SF1/J f 70.12 12.012   12 3.4675 0.1713 47.8, 86.96666667 0.98
B6129SF1/J m 60.17 10.948   12 3.1603 0.1819 43.2, 77.53333333 -0.45
B6C3F1/J f 59.84 10.259   12 2.9615 0.1715 40.73333333, 75.13333333 -1.66
B6C3F1/J m 58.26 8.4275   12 2.4328 0.1446 45.6, 72.76666667 -0.67
BALB/cByJ f 65.49 10.891   12 3.144 0.1663 53.63333333, 90.13333333 -0.21
BALB/cByJ m 48.375 6.9254   12 1.9992 0.1432 36.9, 59.0 -1.79
C3H/HeJ f 67.37 5.0258   12 1.4508 0.0746 57.43333333, 74.76666667 0.27
C3H/HeJ m 61.38 7.1707   12 2.07 0.1168 51.96666667, 75.23333333 -0.31
C57BL/6J f 65.77 7.9869   12 2.3056 0.1214 46.5, 79.36666667 -0.14
C57BL/6J m 65.0 7.1044   12 2.0509 0.1093 49.4, 72.46666667 0.1
CBA/J f 69.97 6.8625   12 1.981 0.0981 61.26666667, 84.93333333 0.94
CBA/J m 62.48 6.4095   12 1.8503 0.1026 51.23333333, 75.3 -0.19
DBA/2J f 60.48 4.2529   12 1.2277 0.0703 52.56666667, 68.0 -1.49
DBA/2J m 74.42 13.003   12 3.7537 0.1747 53.46666667, 96.4 1.16
FVB/NJ f 68.95 7.3942   12 2.1345 0.1072 60.06666667, 87.0 0.68
FVB/NJ m 60.12 6.77   12 1.9543 0.1126 49.16666667, 69.73333333 -0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 64.2361 2.6321 69.4235 59.0488
129S1/SvImJ m 77.5083 2.6321 82.6957 72.321
A/J f 70.7917 2.6321 75.979 65.6043
A/J m 73.7139 2.6321 78.9012 68.5265
B6129SF1/J f 70.1167 2.6321 75.304 64.9293
B6129SF1/J m 60.1722 2.6321 65.3596 54.9849
B6C3F1/J f 59.8361 2.6321 65.0235 54.6488
B6C3F1/J m 58.2639 2.6321 63.4512 53.0765
BALB/cByJ f 65.4944 2.6321 70.6818 60.3071
BALB/cByJ m 48.375 2.6321 53.5623 43.1877
C3H/HeJ f 67.3694 2.6321 72.5568 62.1821
C3H/HeJ m 61.375 2.6321 66.5623 56.1877
C57BL/6J f 65.7722 2.6321 70.9596 60.5849
C57BL/6J m 65.0028 2.6321 70.1901 59.8154
CBA/J f 69.975 2.6321 75.1623 64.7877
CBA/J m 62.4833 2.6321 67.6707 57.296
DBA/2J f 60.4778 2.6321 65.6651 55.2904
DBA/2J m 74.4194 2.6321 79.6068 69.2321
FVB/NJ f 68.9472 2.6321 74.1346 63.7599
FVB/NJ m 60.125 2.6321 65.3123 54.9377


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 70.8722 1.8612 74.5402 67.2042
A/J both 72.2528 1.8612 75.9208 68.5848
B6129SF1/J both 65.1444 1.8612 68.8125 61.4764
B6C3F1/J both 59.05 1.8612 62.718 55.382
BALB/cByJ both 56.9347 1.8612 60.6027 53.2667
C3H/HeJ both 64.3722 1.8612 68.0402 60.7042
C57BL/6J both 65.3875 1.8612 69.0555 61.7195
CBA/J both 66.2292 1.8612 69.8972 62.5612
DBA/2J both 67.4486 1.8612 71.1166 63.7806
FVB/NJ both 64.5361 1.8612 68.2041 60.8681




  GWAS USING LINEAR MIXED MODELS