Project measure / variable:   Crusio1   oriens_pct_R

ID, description, units MPD:62073   oriens_pct_R   percentage of hippocampus that is stratum oriens   [%]  right  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum oriens right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means31.93   % 31.131   %
Median of the strain means31.91   % 31.394   %
SD of the strain means± 1.9446 ± 1.55
Coefficient of variation (CV)0.0609 0.0498
Min–max range of strain means28.431   –   36.671   % 27.83   –   34.092   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 40.0008 40.0008 4.8975 0.0276
strain 47 1013.407 21.5619 2.6399 < 0.0001
sex:strain 47 272.9207 5.8068 0.711 0.9232
Residuals 343 2801.4947 8.1676


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 31.714 0.0   1   0.0 0.0 31.71362709, 31.71362709 -0.11
BXD1 m 28.294 0.0   1   0.0 0.0 28.29434841, 28.29434841 -1.83
BXD100 f 34.461 2.7035   5 1.209 0.0785 31.88651098, 37.97378461 1.3
BXD100 m 32.636 3.3755   5 1.5096 0.1034 27.04232879, 35.95321969 0.97
BXD101 f 30.611 1.2297   3 0.70999 0.0402 29.59268384, 31.97701536 -0.68
BXD101 m 31.126 2.81   4 1.405 0.0903 27.70681513, 34.38445424 0.0
BXD102 f 30.255 4.5752   5 2.0461 0.1512 23.28161316, 35.81668435 -0.86
BXD102 m 32.062 1.6255   5 0.72696 0.0507 29.50638494, 33.6806213 0.6
BXD11 f 34.106 2.4179   5 1.0813 0.0709 31.93786072, 37.30778119 1.12
BXD11 m 33.43 3.177   5 1.4208 0.095 29.4732569, 37.08094544 1.48
BXD13 f 29.581 4.7654   5 2.1312 0.1611 27.01669761, 38.06083549 -1.21
BXD13 m 27.877 1.6978   5 0.75926 0.0609 25.08249585, 29.4226653 -2.1
BXD14 f 29.53 1.5992   5 0.7152 0.0542 27.7708939, 30.90398019 -1.23
BXD14 m 29.755 3.1359   5 1.4024 0.1054 24.97541469, 33.46924778 -0.89
BXD15 f 32.363 2.2414   5 1.0024 0.0693 29.47613571, 35.75835356 0.22
BXD15 m 31.089 2.054   5 0.91859 0.0661 28.488824, 33.64152608 -0.03
BXD16 f 32.485 2.8542   5 1.2764 0.0879 29.40407123, 35.68366942 0.29
BXD16 m 32.609 2.859   5 1.2786 0.0877 29.27714258, 35.9426724 0.95
BXD18 f 32.116 0.0   1   0.0 0.0 32.11619113, 32.11619113 0.1
BXD18 m 32.683 0.0   1   0.0 0.0 32.68331458, 32.68331458 1.0
BXD19 f 32.524 0.0   1   0.0 0.0 32.52369685, 32.52369685 0.31
BXD19 m 30.268 0.0   1   0.0 0.0 30.26753836, 30.26753836 -0.56
BXD2 f 34.0 2.4874   5 1.1124 0.0732 31.56640283, 38.1279004 1.06
BXD2 m 32.661 4.26   5 1.9051 0.1304 27.56587573, 36.45755017 0.99
BXD21 f 30.445 2.025   5 0.90561 0.0665 27.98812073, 32.35497377 -0.76
BXD21 m 32.029 1.9543   6 0.79786 0.061 29.96572695, 34.61843052 0.58
BXD27 f 30.091 0.78705   5 0.35198 0.0262 29.03182466, 30.81451931 -0.95
BXD27 m 29.728 2.0304   5 0.90804 0.0683 26.15969344, 31.0204154 -0.91
BXD28 f 31.081 2.2603   5 1.0108 0.0727 27.8559672, 33.42945295 -0.44
BXD28 m 31.186 1.5251   5 0.68203 0.0489 29.41496232, 33.13845497 0.04
BXD31 f 29.403 2.7765   5 1.2417 0.0944 26.00014367, 33.11505384 -1.3
BXD31 m 27.83 1.5819   4 0.79094 0.0568 26.40113794, 29.91252896 -2.13
BXD32 f 32.603 1.7208   5 0.76956 0.0528 30.76062586, 34.65209335 0.35
BXD32 m 32.935 3.8775   5 1.7341 0.1177 28.34995205, 38.24278727 1.16
BXD33 m 32.001 0.0   1   0.0 0.0 32.00120583, 32.00120583 0.56
BXD34 f 35.001 0.0   1   0.0 0.0 35.0011535, 35.0011535 1.58
BXD34 m 31.394 0.0   1   0.0 0.0 31.3939166, 31.3939166 0.17
BXD39 f 32.272 3.4622   5 1.5483 0.1073 29.28784931, 37.89551454 0.18
BXD39 m 30.483 2.6908   5 1.2033 0.0883 27.73722394, 33.85118101 -0.42
BXD40 f 29.919 2.603   5 1.1641 0.087 25.71373305, 32.32136518 -1.03
BXD40 m 28.328 3.0777   5 1.3764 0.1086 24.83870236, 32.25625135 -1.81
BXD42 f 30.469 1.767   5 0.79023 0.058 28.36276756, 32.55122377 -0.75
BXD42 m 30.844 1.3544   5 0.60573 0.0439 29.3091123, 32.74767385 -0.19
BXD43 f 33.547 3.0823   5 1.3785 0.0919 30.88019617, 37.05865107 0.83
BXD43 m 32.534 3.6869   5 1.6488 0.1133 28.00133974, 37.06225634 0.9
BXD44 f 31.712 1.7064   5 0.76311 0.0538 29.6585684, 33.92496578 -0.11
BXD44 m 33.332 2.7403   5 1.2255 0.0822 28.95394468, 35.96991375 1.42
BXD48 f 32.77 3.0214   5 1.3512 0.0922 29.28875739, 36.08398577 0.43
BXD48 m 31.995 3.9222   5 1.7541 0.1226 28.50478121, 37.97485047 0.56
BXD49 f 31.735 4.7117   4 2.3558 0.1485 26.74681311, 37.81635587 -0.1
BXD49 m 30.785 3.3523   5 1.4992 0.1089 27.07328896, 34.84574186 -0.22
BXD50 f 32.299 1.343   5 0.60059 0.0416 30.89344739, 34.21375761 0.19
BXD50 m 30.295 0.69227   5 0.30959 0.0229 29.35417735, 31.29374776 -0.54
BXD51 f 31.91 3.0112   5 1.3466 0.0944 28.68960761, 35.50340797 -0.01
BXD51 m 31.457 2.8774   5 1.2868 0.0915 27.50662792, 34.81556844 0.21
BXD6 f 30.477 2.2811   5 1.0202 0.0748 27.22008272, 32.65133423 -0.75
BXD6 m 28.576 2.6035   4 1.3017 0.0911 25.6583832, 30.94813428 -1.65
BXD61 f 28.431 1.8215   5 0.81461 0.0641 26.59540232, 31.44075386 -1.8
BXD61 m 29.49 3.2641   5 1.4597 0.1107 25.66834243, 33.95671086 -1.06
BXD62 f 31.919 2.5276   5 1.1304 0.0792 29.74142226, 36.19116431 -0.01
BXD62 m 31.426 5.0248   5 2.2472 0.1599 27.2190946, 37.65186425 0.19
BXD65 f 31.917 2.2193   3 1.2813 0.0695 29.36339561, 33.38212229 -0.01
BXD65 m 31.623 0.52725   5 0.23579 0.0167 30.77314082, 32.11392522 0.32
BXD66 f 36.671 0.22894   2   0.16188 0.0062 36.50890494, 36.83267323 2.44
BXD66 m 32.093 2.666   2   1.8852 0.0831 30.20775251, 33.97808138 0.62
BXD68 f 30.526 4.2933   2   3.0358 0.1406 27.49059319, 33.56218784 -0.72
BXD68 m 28.719 2.2127   3 1.2775 0.077 26.3941832, 30.79929913 -1.56
BXD69 f 29.462 4.973   4 2.4865 0.1688 24.24228334, 36.0947241 -1.27
BXD69 m 29.273 1.9795   5 0.88525 0.0676 26.96628606, 32.24372996 -1.2
BXD70 f 29.655 3.1796   5 1.422 0.1072 26.41482801, 33.79767437 -1.17
BXD70 m 30.984 2.8148   5 1.2588 0.0908 28.48118943, 35.57466452 -0.1
BXD71 m 32.527 0.0   1   0.0 0.0 32.52655187, 32.52655187 0.9
BXD73 f 35.608 2.7637   5 1.2359 0.0776 31.89396946, 39.10970819 1.89
BXD73 m 32.525 1.7894   5 0.80025 0.055 30.82987102, 34.56310886 0.9
BXD75 f 29.847 0.89105   5 0.39849 0.0299 28.52016277, 30.98910187 -1.07
BXD75 m 31.436 3.8777   5 1.7342 0.1234 28.52233208, 37.69464255 0.2
BXD77 f 31.26 1.0993   2   0.7773 0.0352 30.48226077, 32.03685172 -0.34
BXD77 m 34.092 1.8968   2   1.3413 0.0556 32.75095795, 35.43348 1.91
BXD8 f 33.768 4.0167   5 1.7963 0.1189 28.22193147, 37.75790255 0.95
BXD8 m 33.497 3.6081   5 1.6136 0.1077 28.65845651, 37.47243543 1.53
BXD80 f 29.218 1.3019   5 0.58221 0.0446 27.76070954, 31.14189614 -1.39
BXD80 m 30.205 1.7517   5 0.78338 0.058 27.47225452, 32.07177465 -0.6
BXD81 f 33.223 3.5902   5 1.6056 0.1081 27.78942451, 37.56383333 0.67
BXD81 m 32.288 3.7361   5 1.6708 0.1157 28.40154947, 38.40601275 0.75
BXD84 f 30.47 4.604   5 2.059 0.1511 27.42565148, 38.63796031 -0.75
BXD84 m 30.529 2.4764   5 1.1075 0.0811 27.897358, 34.11249756 -0.39
BXD85 f 33.063 2.3506   2   1.6621 0.0711 31.40086024, 34.72509097 0.58
BXD85 m 32.488 0.56711   2   0.40101 0.0175 32.08661532, 32.88863188 0.88
BXD86 f 31.516 1.5888   5 0.71055 0.0504 29.04712449, 33.39538442 -0.21
BXD86 m 30.585 0.69142   4 0.34571 0.0226 29.74099934, 31.41051878 -0.35
BXD87 f 32.647 1.6824   5 0.75238 0.0515 31.29781427, 35.27413804 0.37
BXD87 m 31.298 1.6986   5 0.75965 0.0543 29.70818592, 33.81586109 0.11
BXD89 f 30.253 0.94216   5 0.42135 0.0311 29.09551006, 31.26426048 -0.86
BXD89 m 32.281 2.2419   5 1.0026 0.0694 29.45256864, 34.99086972 0.74
BXD90 f 34.722 5.1147   3 2.953 0.1473 29.62488348, 39.85415624 1.44
BXD90 m 32.842 1.9896   3 1.1487 0.0606 30.74030519, 34.69617612 1.1
BXD92 f 33.612 0.0   1   0.0 0.0 33.61233003, 33.61233003 0.87
BXD92 m 28.678 0.0   1   0.0 0.0 28.67839314, 28.67839314 -1.58
BXD96 f 35.714 2.4569   5 1.0988 0.0688 32.82363155, 38.88566857 1.95
BXD96 m 30.007 1.3498   5 0.60366 0.045 27.74947614, 31.39524181 -0.73
BXD97 f 35.764 4.545   5 2.0326 0.1271 29.58460303, 40.75277229 1.97
BXD97 m 31.692 1.1314   4 0.56568 0.0357 30.04191342, 32.48764987 0.36
BXD98 f 32.564 8.1513   2   5.7639 0.2503 26.80034127, 38.32806618 0.33
BXD98 m 31.667 5.4859   4 2.7429 0.1732 26.61830524, 39.36567644 0.35
C57BL/6J f 30.241 2.7625   5 1.2354 0.0913 27.86707999, 34.78253421 -0.87
C57BL/6J m 29.437 2.0329   5 0.90913 0.0691 27.02645916, 31.5579095 -1.09
DBA/2J f 30.731 2.9257   5 1.3084 0.0952 26.16790156, 33.95347131 -0.62
DBA/2J m 30.316 3.0043   5 1.3435 0.0991 26.47457518, 34.12678475 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 34.4605 1.2781 36.9744 31.9467
BXD100 m 32.6365 1.2781 35.1504 30.1226
BXD101 f 30.6107 1.65 33.8561 27.3653
BXD101 m 31.1263 1.429 33.937 28.3157
BXD102 f 30.2546 1.2781 32.7685 27.7407
BXD102 m 32.0625 1.2781 34.5764 29.5486
BXD11 f 34.1059 1.2781 36.6198 31.592
BXD11 m 33.4298 1.2781 35.9437 30.9159
BXD13 f 29.5807 1.2781 32.0946 27.0668
BXD13 m 27.8772 1.2781 30.3911 25.3633
BXD14 f 29.5295 1.2781 32.0434 27.0156
BXD14 m 29.7546 1.2781 32.2685 27.2407
BXD15 f 32.3626 1.2781 34.8765 29.8487
BXD15 m 31.089 1.2781 33.6029 28.5751
BXD16 f 32.485 1.2781 34.9989 29.9711
BXD16 m 32.6092 1.2781 35.1231 30.0953
BXD2 f 33.9999 1.2781 36.5138 31.486
BXD2 m 32.6611 1.2781 35.175 30.1472
BXD21 f 30.4452 1.2781 32.9591 27.9313
BXD21 m 32.0288 1.1667 34.3236 29.7339
BXD27 f 30.0912 1.2781 32.6051 27.5774
BXD27 m 29.7284 1.2781 32.2423 27.2145
BXD28 f 31.0806 1.2781 33.5945 28.5667
BXD28 m 31.1858 1.2781 33.6997 28.6719
BXD31 f 29.4032 1.2781 31.9171 26.8894
BXD31 m 27.8301 1.429 30.6407 25.0195
BXD32 f 32.6028 1.2781 35.1167 30.0889
BXD32 m 32.9345 1.2781 35.4484 30.4206
BXD39 f 32.2719 1.2781 34.7858 29.758
BXD39 m 30.4833 1.2781 32.9972 27.9694
BXD40 f 29.9188 1.2781 32.4327 27.4049
BXD40 m 28.3278 1.2781 30.8416 25.8139
BXD42 f 30.4688 1.2781 32.9827 27.9549
BXD42 m 30.8442 1.2781 33.358 28.3303
BXD43 f 33.5472 1.2781 36.0611 31.0333
BXD43 m 32.5339 1.2781 35.0477 30.02
BXD44 f 31.7117 1.2781 34.2256 29.1978
BXD44 m 33.3324 1.2781 35.8463 30.8185
BXD48 f 32.7695 1.2781 35.2834 30.2556
BXD48 m 31.9947 1.2781 34.5086 29.4808
BXD49 f 31.7348 1.429 34.5455 28.9242
BXD49 m 30.7851 1.2781 33.299 28.2712
BXD50 f 32.299 1.2781 34.8129 29.7851
BXD50 m 30.2952 1.2781 32.8091 27.7813
BXD51 f 31.9096 1.2781 34.4235 29.3957
BXD51 m 31.4566 1.2781 33.9705 28.9427
BXD6 f 30.4773 1.2781 32.9912 27.9634
BXD6 m 28.5762 1.429 31.3868 25.7656
BXD61 f 28.4307 1.2781 30.9445 25.9168
BXD61 m 29.4897 1.2781 32.0036 26.9759
BXD62 f 31.9186 1.2781 34.4325 29.4047
BXD62 m 31.4256 1.2781 33.9395 28.9117
BXD65 f 31.9168 1.65 35.1622 28.6714
BXD65 m 31.6232 1.2781 34.1371 29.1093
BXD66 f 36.6708 2.0208 40.6456 32.696
BXD66 m 32.0929 2.0208 36.0677 28.1181
BXD68 f 30.5264 2.0208 34.5012 26.5516
BXD68 m 28.719 1.65 31.9644 25.4736
BXD69 f 29.4616 1.429 32.2722 26.651
BXD69 m 29.2728 1.2781 31.7867 26.7589
BXD70 f 29.6552 1.2781 32.1691 27.1413
BXD70 m 30.9842 1.2781 33.4981 28.4703
BXD73 f 35.6077 1.2781 38.1216 33.0938
BXD73 m 32.5246 1.2781 35.0384 30.0107
BXD75 f 29.8471 1.2781 32.361 27.3332
BXD75 m 31.436 1.2781 33.9499 28.9221
BXD77 f 31.2596 2.0208 35.2344 27.2847
BXD77 m 34.0922 2.0208 38.067 30.1174
BXD8 f 33.7676 1.2781 36.2815 31.2537
BXD8 m 33.4972 1.2781 36.011 30.9833
BXD80 f 29.2177 1.2781 31.7316 26.7038
BXD80 m 30.2046 1.2781 32.7185 27.6907
BXD81 f 33.2225 1.2781 35.7364 30.7086
BXD81 m 32.2878 1.2781 34.8017 29.7739
BXD84 f 30.4702 1.2781 32.9841 27.9563
BXD84 m 30.5292 1.2781 33.043 28.0153
BXD85 f 33.063 2.0208 37.0378 29.0882
BXD85 m 32.4876 2.0208 36.4624 28.5128
BXD86 f 31.5164 1.2781 34.0303 29.0025
BXD86 m 30.5847 1.429 33.3953 27.7741
BXD87 f 32.6466 1.2781 35.1605 30.1327
BXD87 m 31.2977 1.2781 33.8116 28.7838
BXD89 f 30.2529 1.2781 32.7668 27.7391
BXD89 m 32.2808 1.2781 34.7947 29.7669
BXD90 f 34.7216 1.65 37.967 31.4762
BXD90 m 32.8425 1.65 36.0879 29.5971
BXD96 f 35.714 1.2781 38.2278 33.2001
BXD96 m 30.0075 1.2781 32.5214 27.4936
BXD97 f 35.7638 1.2781 38.2777 33.25
BXD97 m 31.6917 1.429 34.5023 28.8811
BXD98 f 32.5642 2.0208 36.539 28.5894
BXD98 m 31.6674 1.429 34.478 28.8568
C57BL/6J f 30.2414 1.2781 32.7552 27.7275
C57BL/6J m 29.4371 1.2781 31.951 26.9232
DBA/2J f 30.731 1.2781 33.2449 28.2171
DBA/2J m 30.3162 1.2781 32.8301 27.8023


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 33.5485 0.9037 35.3261 31.7709
BXD101 both 30.8685 1.0914 33.0152 28.7219
BXD102 both 31.1585 0.9037 32.9361 29.381
BXD11 both 33.7678 0.9037 35.5454 31.9902
BXD13 both 28.7289 0.9037 30.5065 26.9513
BXD14 both 29.6421 0.9037 31.4196 27.8645
BXD15 both 31.7258 0.9037 33.5034 29.9482
BXD16 both 32.5471 0.9037 34.3247 30.7695
BXD2 both 33.3305 0.9037 35.1081 31.5529
BXD21 both 31.237 0.8653 32.9389 29.5351
BXD27 both 29.9098 0.9037 31.6874 28.1322
BXD28 both 31.1332 0.9037 32.9108 29.3556
BXD31 both 28.6167 0.9586 30.5021 26.7312
BXD32 both 32.7687 0.9037 34.5463 30.9911
BXD39 both 31.3776 0.9037 33.1552 29.6
BXD40 both 29.1233 0.9037 30.9009 27.3457
BXD42 both 30.6565 0.9037 32.4341 28.8789
BXD43 both 33.0405 0.9037 34.8181 31.2629
BXD44 both 32.5221 0.9037 34.2996 30.7445
BXD48 both 32.3821 0.9037 34.1597 30.6045
BXD49 both 31.26 0.9586 33.1454 29.3745
BXD50 both 31.2971 0.9037 33.0747 29.5195
BXD51 both 31.6831 0.9037 33.4607 29.9055
BXD6 both 29.5267 0.9586 31.4122 27.6413
BXD61 both 28.9602 0.9037 30.7378 27.1826
BXD62 both 31.6721 0.9037 33.4497 29.8945
BXD65 both 31.77 1.0436 33.8226 29.7174
BXD66 both 34.3819 1.429 37.1925 31.5712
BXD68 both 29.6227 1.3044 32.1884 27.057
BXD69 both 29.3672 0.9586 31.2526 27.4818
BXD70 both 30.3197 0.9037 32.0973 28.5421
BXD73 both 34.0661 0.9037 35.8437 32.2886
BXD75 both 30.6415 0.9037 32.4191 28.864
BXD77 both 32.6759 1.429 35.4865 29.8653
BXD8 both 33.6324 0.9037 35.41 31.8548
BXD80 both 29.7112 0.9037 31.4887 27.9336
BXD81 both 32.7552 0.9037 34.5328 30.9776
BXD84 both 30.4997 0.9037 32.2773 28.7221
BXD85 both 32.7753 1.429 35.5859 29.9647
BXD86 both 31.0506 0.9586 32.936 29.1652
BXD87 both 31.9721 0.9037 33.7497 30.1946
BXD89 both 31.2669 0.9037 33.0445 29.4893
BXD90 both 33.782 1.1667 36.0769 31.4872
BXD96 both 32.8607 0.9037 34.6383 31.0831
BXD97 both 33.7278 0.9586 35.6132 31.8423
BXD98 both 32.1158 1.2375 34.5498 29.6817
C57BL/6J both 29.8392 0.9037 31.6168 28.0616
DBA/2J both 30.5236 0.9037 32.3012 28.746




  GWAS USING LINEAR MIXED MODELS