Project measure / variable:   Palmer6   center_d1

ID, description, units MPD:59821   center_d1   duration in center of arena on day 1   [s]  
Data set, strains Palmer6   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer6 - duration in center of arena on day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means115   s 145   s
Median of the strain means112   s 139   s
SD of the strain means± 39.0 ± 35.6
Coefficient of variation (CV)0.338 0.246
Min–max range of strain means61.3   –   190   s 70.3   –   220   s
Mean sample size per strain5.8   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 79576.7143 79576.7143 18.562 < 0.0001
strain 29 398831.9423 13752.8256 3.208 < 0.0001
sex:strain 29 95307.6978 3286.4723 0.7666 0.8034
Residuals 304 1303269.9313 4287.0721


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 81.3 101.0   6 41.1 1.24 25.0, 283.0 -0.87
129SB6F1 m 113.0 55.3   5 24.7 0.487 54.0, 174.0 -0.89
AB6F1 f 62.0 28.6   6 11.7 0.461 22.0, 110.0 -1.37
AB6F1 m 79.7 49.1   7 18.6 0.616 10.0, 160.0 -1.82
AKB6F1 f 129.0 52.3   6 21.4 0.407 47.0, 194.0 0.35
AKB6F1 m 139.0 77.4   5 34.6 0.557 39.0, 237.0 -0.16
BKSB6F1 f 83.2 37.8   6 15.4 0.455 29.0, 115.0 -0.82
BKSB6F1 m 127.0 30.8   6 12.6 0.242 84.0, 165.0 -0.49
BTBRB6F1 f 61.4 55.1   5 24.6 0.897 25.0, 158.0 -1.38
BTBRB6F1 m 100.0 73.3   6 29.9 0.732 29.0, 204.0 -1.25
BUB6F1 f 88.8 64.2   4 32.1 0.723 28.0, 170.0 -0.68
BUB6F1 m 135.0 78.1   5 34.9 0.58 25.0, 238.0 -0.27
C3B6F1 f 144.0 73.4   5 32.8 0.51 45.0, 222.0 0.73
C3B6F1 m 118.0 56.4   5 25.2 0.479 71.0, 212.0 -0.75
C57BL/6J f 139.0 65.1   17 15.8 0.469 35.0, 281.0 0.61
C57BL/6J m 180.0 61.0   16 15.3 0.34 80.0, 278.0 1.0
C58B6F1 f 181.0 30.2   5 13.5 0.166 152.0, 224.0 1.68
C58B6F1 m 177.0 100.0   5 44.8 0.566 97.0, 300.0 0.91
CBAB6F1 f 178.0 30.9   6 12.6 0.174 135.0, 220.0 1.61
CBAB6F1 m 220.0 66.8   8 23.6 0.303 135.0, 348.0 2.12
CByB6F1 f 78.3 63.0   6 25.7 0.804 13.0, 179.0 -0.95
CByB6F1 m 139.0 62.5   6 25.5 0.45 67.0, 253.0 -0.16
D2B6F1 f 94.3 51.6   6 21.1 0.547 44.0, 158.0 -0.54
D2B6F1 m 116.0 74.0   5 33.1 0.636 24.0, 207.0 -0.8
DDYB6F1 f 76.0 48.8   6 19.9 0.642 17.0, 140.0 -1.01
DDYB6F1 m 70.3 52.1   7 19.7 0.741 22.0, 145.0 -2.09
FVBB6F1 f 190.0 126.0   5 56.5 0.666 42.0, 338.0 1.91
FVBB6F1 m 106.0 76.5   6 31.2 0.725 29.0, 223.0 -1.08
IB6F1 f 77.8 26.1   4 13.0 0.335 56.0, 114.0 -0.96
IB6F1 m 133.0 50.6   6 20.6 0.381 66.0, 217.0 -0.32
KKB6F1 f 79.3 61.3   6 25.0 0.773 20.0, 182.0 -0.92
KKB6F1 m 140.0 42.9   5 19.2 0.306 103.0, 189.0 -0.13
LGB6F1 f 77.3 42.6   6 17.4 0.551 32.0, 154.0 -0.97
LGB6F1 m 133.0 72.9   7 27.6 0.548 41.0, 258.0 -0.32
LPB6F1 f 61.3 50.8   6 20.8 0.829 5.0, 148.0 -1.38
LPB6F1 m 127.0 47.0   5 21.0 0.371 75.0, 190.0 -0.49
MAB6F1 f 125.0 76.8   6 31.4 0.614 28.0, 233.0 0.25
MAB6F1 m 169.0 59.8   6 24.4 0.354 116.0, 282.0 0.69
MRLB6F1 f 171.0 145.0   6 59.3 0.85 43.0, 399.0 1.43
MRLB6F1 m 183.0 81.4   6 33.2 0.444 114.0, 336.0 1.08
NODB6F1 f 100.0 98.4   7 37.2 0.982 19.0, 310.0 -0.39
NODB6F1 m 159.0 73.6   6 30.1 0.462 76.0, 251.0 0.41
NONB6F1 f 145.0 53.7   5 24.0 0.371 89.0, 227.0 0.76
NONB6F1 m 163.0 86.5   4 43.3 0.53 75.0, 256.0 0.52
NZBB6F1 f 92.8 55.5   6 22.7 0.598 16.0, 175.0 -0.58
NZBB6F1 m 119.0 64.8   6 26.5 0.546 40.0, 188.0 -0.72
NZWB6F1 f 100.0 67.5   6 27.6 0.673 40.0, 192.0 -0.39
NZWB6F1 m 200.0 73.1   5 32.7 0.365 89.0, 285.0 1.56
PLB6F1 f 125.0 60.0   5 26.8 0.48 28.0, 182.0 0.25
PLB6F1 m 161.0 46.7   5 20.9 0.289 122.0, 232.0 0.46
RIIIB6F1 f 148.0 41.3   6 16.9 0.28 81.0, 203.0 0.84
RIIIB6F1 m 129.0 45.7   6 18.7 0.354 83.0, 197.0 -0.44
SEAB6F1 f 140.0 31.9   6 13.0 0.228 90.0, 187.0 0.63
SEAB6F1 m 197.0 71.1   5 31.8 0.36 80.0, 256.0 1.47
SJLB6F1 f 136.0 74.3   6 30.3 0.547 35.0, 222.0 0.53
SJLB6F1 m 152.0 92.0   6 37.5 0.606 32.0, 309.0 0.21
SMB6F1 f 134.0 40.6   6 16.6 0.302 84.0, 184.0 0.48
SMB6F1 m 162.0 26.8   6 11.0 0.165 134.0, 206.0 0.49
SWRB6F1 f 161.0 67.4   6 27.5 0.419 73.0, 250.0 1.17
SWRB6F1 m 189.0 19.3   6 7.89 0.102 168.0, 217.0 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 81.3333 26.7304 133.9333 28.7334
129SB6F1 m 113.4 29.2816 171.0204 55.7796
AB6F1 f 62.0 26.7304 114.5999 9.4001
AB6F1 m 79.7143 24.7475 128.4124 31.0162
AKB6F1 f 128.6667 26.7304 181.2666 76.0667
AKB6F1 m 138.8 29.2816 196.4204 81.1796
BKSB6F1 f 83.1667 26.7304 135.7666 30.5667
BKSB6F1 m 127.3333 26.7304 179.9333 74.7334
BTBRB6F1 f 61.4 29.2816 119.0204 3.7796
BTBRB6F1 m 100.1667 26.7304 152.7666 47.5667
BUB6F1 f 88.75 32.7379 153.1715 24.3285
BUB6F1 m 134.8 29.2816 192.4204 77.1796
C3B6F1 f 144.0 29.2816 201.6204 86.3796
C3B6F1 m 117.6 29.2816 175.2204 59.9796
C57BL/6J f 138.8235 15.8802 170.0726 107.5745
C57BL/6J m 179.625 16.3689 211.8358 147.4142
C58B6F1 f 181.2 29.2816 238.8204 123.5796
C58B6F1 m 177.0 29.2816 234.6204 119.3796
CBAB6F1 f 177.5 26.7304 230.0999 124.9001
CBAB6F1 m 220.125 23.1492 265.6779 174.5721
CByB6F1 f 78.3333 26.7304 130.9333 25.7334
CByB6F1 m 138.6667 26.7304 191.2666 86.0667
D2B6F1 f 94.3333 26.7304 146.9333 41.7334
D2B6F1 m 116.4 29.2816 174.0204 58.7796
DDYB6F1 f 76.0 26.7304 128.5999 23.4001
DDYB6F1 m 70.2857 24.7475 118.9838 21.5876
FVBB6F1 f 189.8 29.2816 247.4204 132.1796
FVBB6F1 m 105.5 26.7304 158.0999 52.9001
IB6F1 f 77.75 32.7379 142.1715 13.3285
IB6F1 m 132.8333 26.7304 185.4333 80.2334
KKB6F1 f 79.3333 26.7304 131.9333 26.7334
KKB6F1 m 140.4 29.2816 198.0204 82.7796
LGB6F1 f 77.3333 26.7304 129.9333 24.7334
LGB6F1 m 133.0 24.7475 181.6981 84.3019
LPB6F1 f 61.3333 26.7304 113.9333 8.7334
LPB6F1 m 126.6 29.2816 184.2204 68.9796
MAB6F1 f 125.1667 26.7304 177.7666 72.5667
MAB6F1 m 168.8333 26.7304 221.4333 116.2334
MRLB6F1 f 170.8333 26.7304 223.4333 118.2334
MRLB6F1 m 183.3333 26.7304 235.9333 130.7334
NODB6F1 f 100.2857 24.7475 148.9838 51.5876
NODB6F1 m 159.3333 26.7304 211.9333 106.7334
NONB6F1 f 144.8 29.2816 202.4204 87.1796
NONB6F1 m 163.25 32.7379 227.6715 98.8285
NZBB6F1 f 92.8333 26.7304 145.4333 40.2334
NZBB6F1 m 118.6667 26.7304 171.2666 66.0667
NZWB6F1 f 100.3333 26.7304 152.9333 47.7334
NZWB6F1 m 200.0 29.2816 257.6204 142.3796
PLB6F1 f 125.0 29.2816 182.6204 67.3796
PLB6F1 m 161.2 29.2816 218.8204 103.5796
RIIIB6F1 f 147.6667 26.7304 200.2666 95.0667
RIIIB6F1 m 129.1667 26.7304 181.7666 76.5667
SEAB6F1 f 139.8333 26.7304 192.4333 87.2334
SEAB6F1 m 197.2 29.2816 254.8204 139.5796
SJLB6F1 f 135.8333 26.7304 188.4333 83.2334
SJLB6F1 m 151.6667 26.7304 204.2666 99.0667
SMB6F1 f 134.5 26.7304 187.0999 81.9001
SMB6F1 m 162.3333 26.7304 214.9333 109.7334
SWRB6F1 f 161.0 26.7304 213.5999 108.4001
SWRB6F1 m 188.6667 26.7304 241.2666 136.0667


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 97.3667 19.8238 136.3758 58.3575
AB6F1 both 70.8571 18.2137 106.698 35.0163
AKB6F1 both 133.7333 19.8238 172.7425 94.7242
BKSB6F1 both 105.25 18.9012 142.4438 68.0562
BTBRB6F1 both 80.7833 19.8238 119.7925 41.7742
BUB6F1 both 111.775 21.9612 154.9903 68.5597
C3B6F1 both 130.8 20.7052 171.5437 90.0563
C57BL/6J both 159.2243 11.4031 181.6633 136.7853
C58B6F1 both 179.1 20.7052 219.8437 138.3563
CBAB6F1 both 198.8125 17.6805 233.6041 164.0209
CByB6F1 both 108.5 18.9012 145.6938 71.3062
D2B6F1 both 105.3667 19.8238 144.3758 66.3575
DDYB6F1 both 73.1429 18.2137 108.9837 37.302
FVBB6F1 both 147.65 19.8238 186.6592 108.6408
IB6F1 both 105.2917 21.1322 146.8756 63.7078
KKB6F1 both 109.8667 19.8238 148.8758 70.8575
LGB6F1 both 105.1667 18.2137 141.0075 69.3258
LPB6F1 both 93.9667 19.8238 132.9758 54.9575
MAB6F1 both 147.0 18.9012 184.1938 109.8062
MRLB6F1 both 177.0833 18.9012 214.2771 139.8896
NODB6F1 both 129.8095 18.2137 165.6503 93.9687
NONB6F1 both 154.025 21.9612 197.2403 110.8097
NZBB6F1 both 105.75 18.9012 142.9438 68.5562
NZWB6F1 both 150.1667 19.8238 189.1758 111.1575
PLB6F1 both 143.1 20.7052 183.8437 102.3563
RIIIB6F1 both 138.4167 18.9012 175.6104 101.2229
SEAB6F1 both 168.5167 19.8238 207.5258 129.5075
SJLB6F1 both 143.75 18.9012 180.9438 106.5562
SMB6F1 both 148.4167 18.9012 185.6104 111.2229
SWRB6F1 both 174.8333 18.9012 212.0271 137.6396




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA