Project measure / variable:   Palmer4   distance_d1

ID, description, units MPD:59322   distance_d1   total distance traveled on day 1, saline   [cm]  
Data set, strains Palmer4   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer4 - total distance traveled on day 1, saline



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means4370   cm 4425   cm
Median of the strain means4276   cm 4394   cm
SD of the strain means± 1246 ± 1195
Coefficient of variation (CV)0.285 0.270
Min–max range of strain means1739   –   6807   cm 2289   –   7118   cm
Mean sample size per strain5.6   mice 5.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 435883.4785 435883.4785 0.3044 0.5816
strain 29 459999861.913 15862064.2039 11.0771 < 0.0001
sex:strain 29 38503463.8997 1327705.6517 0.9272 0.5775
Residuals 288 412406470.4214 1431966.9112


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(129S x B6-Cacna1c)F1 f 1739.0 529.0   7 200.0 0.304 842.0, 2608.0 -2.11
(129S x B6-Cacna1c)F1 m 2289.0 1194.0   5 534.0 0.522 957.0, 3639.0 -1.79
(AJ x B6-Cacna1c)F1 f 3078.0 849.0   4 425.0 0.276 2026.0, 4106.0 -1.04
(AJ x B6-Cacna1c)F1 m 2700.0 1341.0   6 547.0 0.497 1346.0, 4711.0 -1.44
(AKR x B6-Cacna1c)F1 f 5575.0 1887.0   5 844.0 0.339 3765.0, 8490.0 0.97
(AKR x B6-Cacna1c)F1 m 4764.0 1574.0   5 704.0 0.33 2851.0, 7228.0 0.28
(B6 x B6-Cacna1c)F1 f 4359.0 972.0   15 251.0 0.223 2967.0, 6379.0 -0.01
(B6 x B6-Cacna1c)F1 m 4048.0 952.0   15 246.0 0.235 2521.0, 5999.0 -0.32
(BALB x B6-Cacna1c)F1 f 4406.0 1613.0   6 658.0 0.366 2327.0, 6908.0 0.03
(BALB x B6-Cacna1c)F1 m 4209.0 1425.0   6 582.0 0.339 2245.0, 5875.0 -0.18
(BLKS x B6-Cacna1c)F1 f 2286.0 737.0   6 301.0 0.322 1523.0, 3165.0 -1.67
(BLKS x B6-Cacna1c)F1 m 2551.0 351.0   6 143.0 0.137 1998.0, 3044.0 -1.57
(BTBR x B6-Cacna1c)F1 f 4015.0 1274.0   7 481.0 0.317 2222.0, 5968.0 -0.28
(BTBR x B6-Cacna1c)F1 m 5502.0 1760.0   6 719.0 0.32 2504.0, 7556.0 0.9
(BUB x B6-Cacna1c)F1 f 4200.0 1606.0   5 718.0 0.383 1463.0, 5389.0 -0.14
(BUB x B6-Cacna1c)F1 m 4969.0 2280.0   5 1020.0 0.459 2938.0, 7461.0 0.46
(C3H x B6-Cacna1c)F1 f 3754.0 1243.0   6 508.0 0.331 2182.0, 5767.0 -0.49
(C3H x B6-Cacna1c)F1 m 3618.0 1120.0   5 501.0 0.31 2042.0, 4766.0 -0.68
(C58 x B6-Cacna1c)F1 f 6324.0 2078.0   6 848.0 0.329 3960.0, 9143.0 1.57
(C58 x B6-Cacna1c)F1 m 5789.0 1614.0   6 659.0 0.279 3070.0, 7909.0 1.14
(CBA x B6-Cacna1c)F1 f 5229.0 843.0   5 377.0 0.161 4170.0, 6189.0 0.69
(CBA x B6-Cacna1c)F1 m 4737.0 922.0   4 461.0 0.195 3741.0, 5590.0 0.26
(DBA x B6-Cacna1c)F1 f 2635.0 281.0   5 126.0 0.107 2374.0, 3107.0 -1.39
(DBA x B6-Cacna1c)F1 m 3674.0 721.0   6 294.0 0.196 2938.0, 4692.0 -0.63
(DDY x B6-Cacna1c)F1 f 3398.0 1409.0   6 575.0 0.415 1811.0, 5921.0 -0.78
(DDY x B6-Cacna1c)F1 m 3682.0 1111.0   5 497.0 0.302 2755.0, 5571.0 -0.62
(FVB x B6-Cacna1c)F1 f 5700.0 1373.0   6 560.0 0.241 3830.0, 6811.0 1.07
(FVB x B6-Cacna1c)F1 m 4829.0 525.0   6 214.0 0.109 4213.0, 5538.0 0.34
(ILN x B6-Cacna1c)F1 f 4120.0 863.0   5 386.0 0.21 2755.0, 4930.0 -0.2
(ILN x B6-Cacna1c)F1 m 4031.0 835.0   6 341.0 0.207 2841.0, 5044.0 -0.33
(KK x B6-Cacna1c)F1 f 3642.0 621.0   6 254.0 0.171 2937.0, 4608.0 -0.58
(KK x B6-Cacna1c)F1 m 3594.0 519.0   6 212.0 0.145 3128.0, 4619.0 -0.7
(LG x B6-Cacna1c)F1 f 5085.0 1126.0   5 504.0 0.221 3284.0, 6360.0 0.57
(LG x B6-Cacna1c)F1 m 4586.0 560.0   4 280.0 0.122 4142.0, 5363.0 0.13
(LP x B6-Cacna1c)F1 f 4368.0 884.0   5 395.0 0.202 3135.0, 5608.0 0.0
(LP x B6-Cacna1c)F1 m 4524.0 1159.0   4 580.0 0.256 3071.0, 5857.0 0.08
(MA x B6-Cacna1c)F1 f 4791.0 931.0   5 416.0 0.194 3901.0, 6324.0 0.34
(MA x B6-Cacna1c)F1 m 5022.0 932.0   6 381.0 0.186 3915.0, 6096.0 0.5
(MRL x B6-Cacna1c)F1 f 4241.0 1345.0   5 601.0 0.317 2730.0, 6393.0 -0.1
(MRL x B6-Cacna1c)F1 m 4315.0 1579.0   6 645.0 0.366 2884.0, 6977.0 -0.09
(NOD x B6-Cacna1c)F1 f 4312.0 1366.0   6 558.0 0.317 2968.0, 6241.0 -0.05
(NOD x B6-Cacna1c)F1 m 6434.0 776.0   6 317.0 0.121 5493.0, 7616.0 1.68
(NON x B6-Cacna1c)F1 f 4516.0 1333.0   5 596.0 0.295 2739.0, 5629.0 0.12
(NON x B6-Cacna1c)F1 m 3857.0 537.0   6 219.0 0.139 3064.0, 4380.0 -0.48
(NZB x B6-Cacna1c)F1 f 3901.0 1679.0   6 686.0 0.431 2050.0, 6091.0 -0.38
(NZB x B6-Cacna1c)F1 m 3714.0 1408.0   5 630.0 0.379 2194.0, 5587.0 -0.6
(NZW x B6-Cacna1c)F1 f 2819.0 622.0   5 278.0 0.221 1893.0, 3571.0 -1.24
(NZW x B6-Cacna1c)F1 m 2539.0 341.0   5 152.0 0.134 2079.0, 3022.0 -1.58
(PL x B6-Cacna1c)F1 f 4320.0 612.0   5 274.0 0.142 3772.0, 5003.0 -0.04
(PL x B6-Cacna1c)F1 m 4188.0 780.0   6 318.0 0.186 3233.0, 5453.0 -0.2
(RIII x B6-Cacna1c)F1 f 6411.0 872.0   6 356.0 0.136 5258.0, 7410.0 1.64
(RIII x B6-Cacna1c)F1 m 5511.0 1267.0   6 517.0 0.23 3582.0, 7069.0 0.91
(SEA x B6-Cacna1c)F1 f 6807.0 964.0   6 394.0 0.142 5002.0, 7755.0 1.96
(SEA x B6-Cacna1c)F1 m 6978.0 2139.0   6 873.0 0.307 4252.0, 10202.0 2.14
(SJL x B6-Cacna1c)F1 f 4094.0 2347.0   5 1050.0 0.573 1525.0, 7468.0 -0.22
(SJL x B6-Cacna1c)F1 m 4473.0 1128.0   6 461.0 0.252 2979.0, 5684.0 0.04
(SM x B6-Cacna1c)F1 f 6744.0 439.0   5 196.0 0.0651 6134.0, 7370.0 1.91
(SM x B6-Cacna1c)F1 m 7118.0 823.0   6 336.0 0.116 6127.0, 8037.0 2.25
(SWR x B6-Cacna1c)F1 f 4221.0 1081.0   6 441.0 0.256 2561.0, 5896.0 -0.12
(SWR x B6-Cacna1c)F1 m 4506.0 988.0   3 571.0 0.219 3366.0, 5123.0 0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 f 1739.1429 452.2905 2629.3569 848.9288
(129S x B6-Cacna1c)F1 m 2288.8 535.1573 3342.1155 1235.4845
(AJ x B6-Cacna1c)F1 f 3078.0 598.3241 4255.6425 1900.3575
(AJ x B6-Cacna1c)F1 m 2699.5 488.5296 3661.0411 1737.9589
(AKR x B6-Cacna1c)F1 f 5574.6 535.1573 6627.9155 4521.2845
(AKR x B6-Cacna1c)F1 m 4764.4 535.1573 5817.7155 3711.0845
(B6 x B6-Cacna1c)F1 f 4359.4 308.9732 4967.532 3751.268
(B6 x B6-Cacna1c)F1 m 4047.7333 308.9732 4655.8653 3439.6013
(BALB x B6-Cacna1c)F1 f 4405.5 488.5296 5367.0411 3443.9589
(BALB x B6-Cacna1c)F1 m 4209.3333 488.5296 5170.8744 3247.7922
(BLKS x B6-Cacna1c)F1 f 2285.6667 488.5296 3247.2078 1324.1256
(BLKS x B6-Cacna1c)F1 m 2551.3333 488.5296 3512.8744 1589.7922
(BTBR x B6-Cacna1c)F1 f 4014.5714 452.2905 4904.7855 3124.3573
(BTBR x B6-Cacna1c)F1 m 5502.1667 488.5296 6463.7078 4540.6256
(BUB x B6-Cacna1c)F1 f 4199.6 535.1573 5252.9155 3146.2845
(BUB x B6-Cacna1c)F1 m 4969.0 535.1573 6022.3155 3915.6845
(C3H x B6-Cacna1c)F1 f 3753.6667 488.5296 4715.2078 2792.1256
(C3H x B6-Cacna1c)F1 m 3617.8 535.1573 4671.1155 2564.4845
(C58 x B6-Cacna1c)F1 f 6323.6667 488.5296 7285.2078 5362.1256
(C58 x B6-Cacna1c)F1 m 5789.3333 488.5296 6750.8744 4827.7922
(CBA x B6-Cacna1c)F1 f 5229.2 535.1573 6282.5155 4175.8845
(CBA x B6-Cacna1c)F1 m 4736.75 598.3241 5914.3925 3559.1075
(DBA x B6-Cacna1c)F1 f 2635.4 535.1573 3688.7155 1582.0845
(DBA x B6-Cacna1c)F1 m 3673.8333 488.5296 4635.3744 2712.2922
(DDY x B6-Cacna1c)F1 f 3397.5 488.5296 4359.0411 2435.9589
(DDY x B6-Cacna1c)F1 m 3682.2 535.1573 4735.5155 2628.8845
(FVB x B6-Cacna1c)F1 f 5700.5 488.5296 6662.0411 4738.9589
(FVB x B6-Cacna1c)F1 m 4828.6667 488.5296 5790.2078 3867.1256
(ILN x B6-Cacna1c)F1 f 4120.0 535.1573 5173.3155 3066.6845
(ILN x B6-Cacna1c)F1 m 4031.1667 488.5296 4992.7078 3069.6256
(KK x B6-Cacna1c)F1 f 3642.1667 488.5296 4603.7078 2680.6256
(KK x B6-Cacna1c)F1 m 3593.6667 488.5296 4555.2078 2632.1256
(LG x B6-Cacna1c)F1 f 5084.6 535.1573 6137.9155 4031.2845
(LG x B6-Cacna1c)F1 m 4586.5 598.3241 5764.1425 3408.8575
(LP x B6-Cacna1c)F1 f 4367.6 535.1573 5420.9155 3314.2845
(LP x B6-Cacna1c)F1 m 4524.5 598.3241 5702.1425 3346.8575
(MA x B6-Cacna1c)F1 f 4790.8 535.1573 5844.1155 3737.4845
(MA x B6-Cacna1c)F1 m 5022.3333 488.5296 5983.8744 4060.7922
(MRL x B6-Cacna1c)F1 f 4241.0 535.1573 5294.3155 3187.6845
(MRL x B6-Cacna1c)F1 m 4315.0 488.5296 5276.5411 3353.4589
(NOD x B6-Cacna1c)F1 f 4311.8333 488.5296 5273.3744 3350.2922
(NOD x B6-Cacna1c)F1 m 6433.8333 488.5296 7395.3744 5472.2922
(NON x B6-Cacna1c)F1 f 4515.6 535.1573 5568.9155 3462.2845
(NON x B6-Cacna1c)F1 m 3857.0 488.5296 4818.5411 2895.4589
(NZB x B6-Cacna1c)F1 f 3900.6667 488.5296 4862.2078 2939.1256
(NZB x B6-Cacna1c)F1 m 3713.6 535.1573 4766.9155 2660.2845
(NZW x B6-Cacna1c)F1 f 2819.4 535.1573 3872.7155 1766.0845
(NZW x B6-Cacna1c)F1 m 2539.4 535.1573 3592.7155 1486.0845
(PL x B6-Cacna1c)F1 f 4319.6 535.1573 5372.9155 3266.2845
(PL x B6-Cacna1c)F1 m 4188.0 488.5296 5149.5411 3226.4589
(RIII x B6-Cacna1c)F1 f 6411.0 488.5296 7372.5411 5449.4589
(RIII x B6-Cacna1c)F1 m 5510.6667 488.5296 6472.2078 4549.1256
(SEA x B6-Cacna1c)F1 f 6806.6667 488.5296 7768.2078 5845.1256
(SEA x B6-Cacna1c)F1 m 6977.5 488.5296 7939.0411 6015.9589
(SJL x B6-Cacna1c)F1 f 4094.0 535.1573 5147.3155 3040.6845
(SJL x B6-Cacna1c)F1 m 4472.6667 488.5296 5434.2078 3511.1256
(SM x B6-Cacna1c)F1 f 6743.6 535.1573 7796.9155 5690.2845
(SM x B6-Cacna1c)F1 m 7117.5 488.5296 8079.0411 6155.9589
(SWR x B6-Cacna1c)F1 f 4220.8333 488.5296 5182.3744 3259.2922
(SWR x B6-Cacna1c)F1 m 4506.0 690.8852 5865.8245 3146.1755


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 both 2013.9714 350.3427 2703.5283 1324.4146
(AJ x B6-Cacna1c)F1 both 2888.75 386.2165 3648.915 2128.585
(AKR x B6-Cacna1c)F1 both 5169.5 378.4134 5914.3065 4424.6935
(B6 x B6-Cacna1c)F1 both 4203.5667 218.4771 4633.5809 3773.5524
(BALB x B6-Cacna1c)F1 both 4307.4167 345.4426 4987.3289 3627.5044
(BLKS x B6-Cacna1c)F1 both 2418.5 345.4426 3098.4122 1738.5878
(BTBR x B6-Cacna1c)F1 both 4758.369 332.8768 5413.5489 4103.1892
(BUB x B6-Cacna1c)F1 both 4584.3 378.4134 5329.1065 3839.4935
(C3H x B6-Cacna1c)F1 both 3685.7333 362.3032 4398.8313 2972.6354
(C58 x B6-Cacna1c)F1 both 6056.5 345.4426 6736.4122 5376.5878
(CBA x B6-Cacna1c)F1 both 4982.975 401.368 5772.9616 4192.9884
(DBA x B6-Cacna1c)F1 both 3154.6167 362.3032 3867.7146 2441.5187
(DDY x B6-Cacna1c)F1 both 3539.85 362.3032 4252.948 2826.752
(FVB x B6-Cacna1c)F1 both 5264.5833 345.4426 5944.4956 4584.6711
(ILN x B6-Cacna1c)F1 both 4075.5833 362.3032 4788.6813 3362.4854
(KK x B6-Cacna1c)F1 both 3617.9167 345.4426 4297.8289 2938.0044
(LG x B6-Cacna1c)F1 both 4835.55 401.368 5625.5366 4045.5634
(LP x B6-Cacna1c)F1 both 4446.05 401.368 5236.0366 3656.0634
(MA x B6-Cacna1c)F1 both 4906.5667 362.3032 5619.6646 4193.4687
(MRL x B6-Cacna1c)F1 both 4278.0 362.3032 4991.098 3564.902
(NOD x B6-Cacna1c)F1 both 5372.8333 345.4426 6052.7456 4692.9211
(NON x B6-Cacna1c)F1 both 4186.3 362.3032 4899.398 3473.202
(NZB x B6-Cacna1c)F1 both 3807.1333 362.3032 4520.2313 3094.0354
(NZW x B6-Cacna1c)F1 both 2679.4 378.4134 3424.2065 1934.5935
(PL x B6-Cacna1c)F1 both 4253.8 362.3032 4966.898 3540.702
(RIII x B6-Cacna1c)F1 both 5960.8333 345.4426 6640.7456 5280.9211
(SEA x B6-Cacna1c)F1 both 6892.0833 345.4426 7571.9956 6212.1711
(SJL x B6-Cacna1c)F1 both 4283.3333 362.3032 4996.4313 3570.2354
(SM x B6-Cacna1c)F1 both 6930.55 362.3032 7643.648 6217.452
(SWR x B6-Cacna1c)F1 both 4363.4167 423.079 5196.1357 3530.6976




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA