Project measure / variable:   Palmer3   center

ID, description, units MPD:59211   center   duration in center of arena   [s]  
Data set, strains Palmer3   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer3 - duration in center of arena



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means45.8   s 57.2   s
Median of the strain means38.9   s 53.0   s
SD of the strain means± 27.5 ± 31.1
Coefficient of variation (CV)0.600 0.544
Min–max range of strain means4.66   –   108   s 8.28   –   119   s
Mean sample size per strain5.2   mice 5.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 15221.8701 15221.8701 10.787 0.0012
strain 28 182926.0252 6533.0723 4.6297 < 0.0001
sex:strain 28 59684.178 2131.5778 1.5105 0.0532
Residuals 247 348549.9921 1411.1336


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(129S x B6-Tcf7l2)F1 f 14.0 9.24   6 3.77 0.661 2.8, 25.9 -1.16
(129S x B6-Tcf7l2)F1 m 27.4 28.9   5 12.9 1.05 3.1, 63.2 -0.96
(AJ x B6-Tcf7l2)F1 f 36.1 33.4   6 13.7 0.926 3.9, 89.9 -0.35
(AJ x B6-Tcf7l2)F1 m 8.28 6.25   4 3.12 0.755 2.5, 15.6 -1.57
(AKR x B6-Tcf7l2)F1 f 33.2 15.0   4 7.49 0.451 19.5, 46.9 -0.46
(AKR x B6-Tcf7l2)F1 m 11.2 0.0   1   0.0 0.0 11.2, 11.2 -1.48
(B6 x B6-Tcf7l2)F1 f 59.9 36.4   8 12.9 0.608 13.3, 124.0 0.51
(B6 x B6-Tcf7l2)F1 m 69.7 53.0   9 17.7 0.761 17.5, 163.0 0.4
(BALB x B6-Tcf7l2)F1 f 18.6 12.5   5 5.57 0.671 4.6, 35.7 -0.99
(BALB x B6-Tcf7l2)F1 m 65.3 39.7   4 19.8 0.607 40.6, 124.0 0.26
(BLKS x B6-Tcf7l2)F1 f 57.7 33.7   5 15.1 0.584 29.7, 110.0 0.43
(BLKS x B6-Tcf7l2)F1 m 101.0 88.2   5 39.4 0.874 18.7, 206.0 1.41
(BTBR x B6-Tcf7l2)F1 f 20.6 8.56   5 3.83 0.416 11.0, 33.8 -0.92
(BTBR x B6-Tcf7l2)F1 m 35.1 18.9   4 9.47 0.539 18.8, 62.0 -0.71
(BUB x B6-Tcf7l2)F1 f 103.0 40.7   5 18.2 0.394 42.8, 145.0 2.08
(BUB x B6-Tcf7l2)F1 m 48.3 19.8   5 8.84 0.409 23.8, 67.9 -0.29
(C3H x B6-Tcf7l2)F1 f 12.4 9.07   7 3.43 0.729 4.9, 27.6 -1.22
(C3H x B6-Tcf7l2)F1 m 21.6 16.8   5 7.54 0.779 4.8, 41.3 -1.14
(C57L x B6-Tcf7l2)F1 f 91.8 48.0   3 27.7 0.523 37.9, 130.0 1.68
(C57L x B6-Tcf7l2)F1 m 68.6 24.6   5 11.0 0.358 41.8, 103.0 0.37
(C58 x B6-Tcf7l2)F1 f 75.7 62.4   4 31.2 0.825 15.6, 163.0 1.09
(C58 x B6-Tcf7l2)F1 m 101.0 56.8   4 28.4 0.56 32.5, 163.0 1.41
(CBA x B6-Tcf7l2)F1 f 65.4 42.0   3 24.2 0.642 34.9, 113.0 0.71
(CBA x B6-Tcf7l2)F1 m 100.0 33.7   6 13.8 0.336 34.5, 128.0 1.38
(DBA x B6-Tcf7l2)F1 f 4.66 5.75   5 2.57 1.23 0.4, 14.6 -1.5
(DBA x B6-Tcf7l2)F1 m 16.0 17.2   5 7.71 1.08 1.4, 45.1 -1.32
(DDY x B6-Tcf7l2)F1 f 31.3 23.3   5 10.4 0.744 9.6, 69.9 -0.53
(DDY x B6-Tcf7l2)F1 m 33.3 11.3   5 5.05 0.339 22.3, 50.7 -0.77
(FVB x B6-Tcf7l2)F1 f 36.8 21.7   3 12.5 0.59 11.8, 51.1 -0.33
(FVB x B6-Tcf7l2)F1 m 91.5 66.1   7 25.0 0.722 27.2, 216.0 1.1
(ILN x B6-Tcf7l2)F1 f 15.7 7.22   4 3.61 0.46 6.0, 22.4 -1.1
(ILN x B6-Tcf7l2)F1 m 10.8 10.3   9 3.45 0.958 2.6, 33.4 -1.49
(KK x B6-Tcf7l2)F1 f 16.6 15.1   6 6.17 0.914 1.5, 37.1 -1.06
(KK x B6-Tcf7l2)F1 m 39.4 36.1   3 20.8 0.915 7.9, 78.8 -0.57
(LP x B6-Tcf7l2)F1 f 13.9 7.7   6 3.14 0.553 2.7, 21.7 -1.16
(LP x B6-Tcf7l2)F1 m 30.0 4.03   2   2.85 0.134 27.2, 32.9 -0.87
(MA x B6-Tcf7l2)F1 f 40.2 18.5   4 9.25 0.461 17.2, 56.2 -0.2
(MA x B6-Tcf7l2)F1 m 87.1 49.5   5 22.1 0.568 32.6, 128.0 0.96
(MRL x B6-Tcf7l2)F1 f 54.9 37.3   5 16.7 0.68 7.6, 104.0 0.33
(MRL x B6-Tcf7l2)F1 m 66.9 38.5   4 19.2 0.575 33.0, 113.0 0.31
(NOD x B6-Tcf7l2)F1 f 38.0 17.9   6 7.3 0.471 20.3, 66.8 -0.28
(NOD x B6-Tcf7l2)F1 m 53.0 22.2   7 8.38 0.418 24.1, 94.7 -0.13
(NON x B6-Tcf7l2)F1 f 39.7 27.6   7 10.4 0.695 7.5, 82.0 -0.22
(NON x B6-Tcf7l2)F1 m 45.7 34.0   8 12.0 0.745 5.1, 102.0 -0.37
(NZB x B6-Tcf7l2)F1 f 76.7 69.1   8 24.4 0.901 15.9, 225.0 1.13
(NZB x B6-Tcf7l2)F1 m 66.0 56.4   9 18.8 0.856 0.4, 187.0 0.28
(NZW x B6-Tcf7l2)F1 f 49.7 49.4   4 24.7 0.994 18.0, 123.0 0.14
(NZW x B6-Tcf7l2)F1 m 106.0 80.0   5 35.8 0.754 5.9, 199.0 1.57
(PL x B6-Tcf7l2)F1 f 59.3 25.5   6 10.4 0.43 39.4, 107.0 0.49
(PL x B6-Tcf7l2)F1 m 52.9 40.1   4 20.1 0.758 14.8, 93.6 -0.14
(RIII x B6-Tcf7l2)F1 f 60.4 28.4   6 11.6 0.471 17.3, 96.8 0.53
(RIII x B6-Tcf7l2)F1 m 49.1 16.3   4 8.14 0.332 32.1, 63.8 -0.26
(SEA x B6-Tcf7l2)F1 f 108.0 17.2   5 7.69 0.16 91.5, 127.0 2.27
(SEA x B6-Tcf7l2)F1 m 72.5 41.6   7 15.7 0.574 33.1, 157.0 0.49
(SJL x B6-Tcf7l2)F1 f 36.6 17.7   6 7.22 0.484 9.9, 60.3 -0.33
(SJL x B6-Tcf7l2)F1 m 44.7 23.9   3 13.8 0.534 17.2, 59.8 -0.4
(SM x B6-Tcf7l2)F1 f 70.8 43.3   5 19.4 0.612 24.9, 120.0 0.91
(SM x B6-Tcf7l2)F1 m 73.8 24.5   5 11.0 0.333 47.6, 114.0 0.53
(SWR x B6-Tcf7l2)F1 f 32.1 12.9   5 5.77 0.402 9.7, 42.1 -0.5
(SWR x B6-Tcf7l2)F1 m 119.0 67.5   4 33.8 0.568 57.9, 188.0 1.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Tcf7l2)F1 f 13.9833 15.3359 44.1891 0.0
(129S x B6-Tcf7l2)F1 m 27.42 16.7996 60.5087 0.0
(AJ x B6-Tcf7l2)F1 f 36.1333 15.3359 66.3391 5.9276
(AJ x B6-Tcf7l2)F1 m 8.275 18.7825 45.2693 0.0
(B6 x B6-Tcf7l2)F1 f 59.85 13.2813 86.009 33.691
(B6 x B6-Tcf7l2)F1 m 69.6778 12.5217 94.3407 45.0149
(BALB x B6-Tcf7l2)F1 f 18.58 16.7996 51.6687 0.0
(BALB x B6-Tcf7l2)F1 m 65.275 18.7825 102.2693 28.2807
(BLKS x B6-Tcf7l2)F1 f 57.66 16.7996 90.7487 24.5713
(BLKS x B6-Tcf7l2)F1 m 100.92 16.7996 134.0087 67.8313
(BTBR x B6-Tcf7l2)F1 f 20.58 16.7996 53.6687 0.0
(BTBR x B6-Tcf7l2)F1 m 35.125 18.7825 72.1193 0.0
(BUB x B6-Tcf7l2)F1 f 103.18 16.7996 136.2687 70.0913
(BUB x B6-Tcf7l2)F1 m 48.28 16.7996 81.3687 15.1913
(C3H x B6-Tcf7l2)F1 f 12.4429 14.1983 40.408 0.0
(C3H x B6-Tcf7l2)F1 m 21.62 16.7996 54.7087 0.0
(C57L x B6-Tcf7l2)F1 f 91.8 21.6882 134.5174 49.0826
(C57L x B6-Tcf7l2)F1 m 68.6 16.7996 101.6887 35.5113
(C58 x B6-Tcf7l2)F1 f 75.675 18.7825 112.6693 38.6807
(C58 x B6-Tcf7l2)F1 m 101.425 18.7825 138.4193 64.4307
(CBA x B6-Tcf7l2)F1 f 65.4 21.6882 108.1174 22.6826
(CBA x B6-Tcf7l2)F1 m 100.3 15.3359 130.5058 70.0942
(DBA x B6-Tcf7l2)F1 f 4.66 16.7996 37.7487 0.0
(DBA x B6-Tcf7l2)F1 m 15.96 16.7996 49.0487 0.0
(DDY x B6-Tcf7l2)F1 f 31.34 16.7996 64.4287 0.0
(DDY x B6-Tcf7l2)F1 m 33.26 16.7996 66.3487 0.1713
(FVB x B6-Tcf7l2)F1 f 36.7667 21.6882 79.4841 0.0
(FVB x B6-Tcf7l2)F1 m 91.4714 14.1983 119.4365 63.5063
(ILN x B6-Tcf7l2)F1 f 15.675 18.7825 52.6693 0.0
(ILN x B6-Tcf7l2)F1 m 10.8 12.5217 35.4629 0.0
(KK x B6-Tcf7l2)F1 f 16.55 15.3359 46.7558 0.0
(KK x B6-Tcf7l2)F1 m 39.4333 21.6882 82.1507 0.0
(LP x B6-Tcf7l2)F1 f 13.9167 15.3359 44.1224 0.0
(LP x B6-Tcf7l2)F1 m 30.05 26.5625 82.3679 0.0
(MA x B6-Tcf7l2)F1 f 40.175 18.7825 77.1693 3.1807
(MA x B6-Tcf7l2)F1 m 87.1 16.7996 120.1887 54.0113
(MRL x B6-Tcf7l2)F1 f 54.86 16.7996 87.9487 21.7713
(MRL x B6-Tcf7l2)F1 m 66.875 18.7825 103.8693 29.8807
(NOD x B6-Tcf7l2)F1 f 37.9667 15.3359 68.1724 7.7609
(NOD x B6-Tcf7l2)F1 m 53.0286 14.1983 80.9937 25.0635
(NON x B6-Tcf7l2)F1 f 39.6714 14.1983 67.6365 11.7063
(NON x B6-Tcf7l2)F1 m 45.675 13.2813 71.834 19.516
(NZB x B6-Tcf7l2)F1 f 76.725 13.2813 102.884 50.566
(NZB x B6-Tcf7l2)F1 m 65.9556 12.5217 90.6185 41.2927
(NZW x B6-Tcf7l2)F1 f 49.7 18.7825 86.6943 12.7057
(NZW x B6-Tcf7l2)F1 m 106.1 16.7996 139.1887 73.0113
(PL x B6-Tcf7l2)F1 f 59.3167 15.3359 89.5224 29.1109
(PL x B6-Tcf7l2)F1 m 52.9 18.7825 89.8943 15.9057
(RIII x B6-Tcf7l2)F1 f 60.3667 15.3359 90.5724 30.1609
(RIII x B6-Tcf7l2)F1 m 49.125 18.7825 86.1193 12.1307
(SEA x B6-Tcf7l2)F1 f 107.76 16.7996 140.8487 74.6713
(SEA x B6-Tcf7l2)F1 m 72.4571 14.1983 100.4222 44.492
(SJL x B6-Tcf7l2)F1 f 36.5667 15.3359 66.7724 6.3609
(SJL x B6-Tcf7l2)F1 m 44.7 21.6882 87.4174 1.9826
(SM x B6-Tcf7l2)F1 f 70.78 16.7996 103.8687 37.6913
(SM x B6-Tcf7l2)F1 m 73.76 16.7996 106.8487 40.6713
(SWR x B6-Tcf7l2)F1 f 32.12 16.7996 65.2087 0.0
(SWR x B6-Tcf7l2)F1 m 118.9 18.7825 155.8943 81.9057


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Tcf7l2)F1 both 20.7017 11.3734 43.1029 0.0
(AJ x B6-Tcf7l2)F1 both 22.2042 12.1241 46.0839 0.0
(B6 x B6-Tcf7l2)F1 both 64.7639 9.1267 82.7399 46.7879
(BALB x B6-Tcf7l2)F1 both 41.9275 12.5997 66.7441 17.1109
(BLKS x B6-Tcf7l2)F1 both 79.29 11.8791 102.6873 55.8927
(BTBR x B6-Tcf7l2)F1 both 27.8525 12.5997 52.6691 3.0359
(BUB x B6-Tcf7l2)F1 both 75.73 11.8791 99.1273 52.3327
(C3H x B6-Tcf7l2)F1 both 17.0314 10.9979 38.6931 0.0
(C57L x B6-Tcf7l2)F1 both 80.2 13.7168 107.2169 53.1831
(C58 x B6-Tcf7l2)F1 both 88.55 13.2813 114.709 62.391
(CBA x B6-Tcf7l2)F1 both 82.85 13.2813 109.009 56.691
(DBA x B6-Tcf7l2)F1 both 10.31 11.8791 33.7073 0.0
(DDY x B6-Tcf7l2)F1 both 32.3 11.8791 55.6973 8.9027
(FVB x B6-Tcf7l2)F1 both 64.119 12.9612 89.6476 38.5905
(ILN x B6-Tcf7l2)F1 both 13.2375 11.2869 35.4683 0.0
(KK x B6-Tcf7l2)F1 both 27.9917 13.2813 54.1506 1.8327
(LP x B6-Tcf7l2)F1 both 21.9833 15.3359 52.1891 0.0
(MA x B6-Tcf7l2)F1 both 63.6375 12.5997 88.4541 38.8209
(MRL x B6-Tcf7l2)F1 both 60.8675 12.5997 85.6841 36.0509
(NOD x B6-Tcf7l2)F1 both 45.4976 10.4496 66.0794 24.9159
(NON x B6-Tcf7l2)F1 both 42.6732 9.7209 61.8196 23.5268
(NZB x B6-Tcf7l2)F1 both 71.3403 9.1267 89.3163 53.3643
(NZW x B6-Tcf7l2)F1 both 77.9 12.5997 102.7166 53.0834
(PL x B6-Tcf7l2)F1 both 56.1083 12.1241 79.9881 32.2286
(RIII x B6-Tcf7l2)F1 both 54.7458 12.1241 78.6256 30.8661
(SEA x B6-Tcf7l2)F1 both 90.1086 10.9979 111.7702 68.4469
(SJL x B6-Tcf7l2)F1 both 40.6333 13.2813 66.7923 14.4744
(SM x B6-Tcf7l2)F1 both 72.27 11.8791 95.6673 48.8727
(SWR x B6-Tcf7l2)F1 both 75.51 12.5997 100.3266 50.6934




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA