Project measure / variable:   GMC01   periphery_rest

ID, description, units MPD:55072   periphery_rest   resting time in periphery, 20 min test   [s]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - resting time in periphery, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means103   s 94.1   s
Median of the strain means97.7   s 83.5   s
SD of the strain means± 69.3 ± 63.8
Coefficient of variation (CV)0.672 0.678
Min–max range of strain means7.86   –   192   s 9.21   –   195   s
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4830.1108 4830.1108 4.3607 0.0378
strain 7 1075581.9918 153654.5703 138.7202 < 0.0001
sex:strain 7 23160.6219 3308.6603 2.9871 0.005
Residuals 259 286883.5051 1107.6583


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.0 14.0   16 3.5 1.08 -1.3
129S1/SvImJ m 17.5 14.5   15 3.74 0.828 1.3, 50.9 -1.2
A/J f 7.86 8.7   16 2.18 1.11 0.1, 28.2 -1.38
A/J m 9.21 9.93   16 2.48 1.08 0.2, 37.6 -1.33
C57BL/6J f 103.0 22.7   16 5.68 0.221 61.6, 148.0 0.0
C57BL/6J m 83.5 16.0   16 3.99 0.191 44.7, 110.0 -0.17
CAST/EiJ f 192.0 47.5   19 10.9 0.247 112.0, 285.0 1.28
CAST/EiJ m 143.0 31.6   18 7.44 0.221 78.1, 194.0 0.77
NOD/ShiLtJ f 92.3 28.8   18 6.79 0.312 47.6, 148.0 -0.16
NOD/ShiLtJ m 83.4 21.0   16 5.24 0.251 48.7, 122.0 -0.17
NZO/HlLtJ f 88.7 32.6   17 7.91 0.368 43.7, 152.0 -0.21
NZO/HlLtJ m 78.2 33.1   17 8.02 0.423 22.5, 127.0 -0.25
PWK/PhJ f 183.0 53.6   20 12.0 0.293 85.3, 287.0 1.15
PWK/PhJ m 195.0 51.1   22 10.9 0.262 90.8, 304.0 1.58
WSB/EiJ f 146.0 42.1   18 9.92 0.288 72.4, 218.0 0.62
WSB/EiJ m 143.0 32.2   15 8.33 0.226 78.0, 184.0 0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 12.9687 8.3204 29.3529 -3.4154
129S1/SvImJ m 17.4933 8.5932 34.4149 0.5718
A/J f 7.8625 8.3204 24.2467 -8.5217
A/J m 9.2125 8.3204 25.5967 -7.1717
C57BL/6J f 102.6437 8.3204 119.0279 86.2596
C57BL/6J m 83.5437 8.3204 99.9279 67.1596
CAST/EiJ f 192.0474 7.6353 207.0825 177.0122
CAST/EiJ m 142.7278 7.8445 158.1749 127.2806
NOD/ShiLtJ f 92.3167 7.8445 107.7638 76.8695
NOD/ShiLtJ m 83.425 8.3204 99.8092 67.0408
NZO/HlLtJ f 88.7 8.0719 104.595 72.805
NZO/HlLtJ m 78.1647 8.0719 94.0597 62.2697
PWK/PhJ f 182.8 7.442 197.4545 168.1455
PWK/PhJ m 195.1909 7.0956 209.1634 181.2184
WSB/EiJ f 146.2389 7.8445 161.6861 130.7917
WSB/EiJ m 142.5733 8.5932 159.4949 125.6518


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.231 5.9806 27.0079 3.4542
A/J both 8.5375 5.8834 20.1229 -3.0479
C57BL/6J both 93.0937 5.8834 104.6791 81.5084
CAST/EiJ both 167.3876 5.4734 178.1657 156.6095
NOD/ShiLtJ both 87.8708 5.7176 99.1298 76.6119
NZO/HlLtJ both 83.4324 5.7077 94.6718 72.1929
PWK/PhJ both 188.9955 5.1413 199.1195 178.8714
WSB/EiJ both 144.4061 5.8177 155.862 132.9502




  GWAS USING LINEAR MIXED MODELS