Project measure / variable:   GMC01   center_latency

ID, description, units MPD:55045   center_latency   latency to enter in center of arena, 20 min test   [s]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - latency to enter in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means200   s 194   s
Median of the strain means29.5   s 37.0   s
SD of the strain means± 339 ± 312
Coefficient of variation (CV)1.70 1.61
Min–max range of strain means3.75   –   993   s 6.72   –   896   s
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 230.0077 230.0077 0.004 0.9496
strain 7 23901450.3804 3414492.9115 59.5372 < 0.0001
sex:strain 7 345984.563 49426.3661 0.8618 0.5373
Residuals 259 14853799.3956 57350.5768


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 250.0 395.0   16 98.7 1.58 0.15
129S1/SvImJ m 395.0 435.0   15 112.0 1.1 1.1, 1200.0 0.64
A/J f 993.0 413.0   16 103.0 0.416 0.3, 1200.0 2.34
A/J m 896.0 534.0   16 134.0 0.596 0.2, 1200.0 2.25
C57BL/6J f 4.92 7.75   16 1.94 1.57 0.2, 28.7 -0.57
C57BL/6J m 11.6 15.0   16 3.74 1.29 -0.59
CAST/EiJ f 17.6 7.83   19 1.8 0.444 5.1, 30.8 -0.54
CAST/EiJ m 18.7 8.83   18 2.08 0.472 5.3, 37.1 -0.56
NOD/ShiLtJ f 3.75 3.26   18 0.768 0.869 -0.58
NOD/ShiLtJ m 6.72 2.99   16 0.747 0.445 0.8, 11.5 -0.6
NZO/HlLtJ f 268.0 388.0   17 94.1 1.45 0.4, 1200.0 0.2
NZO/HlLtJ m 154.0 185.0   17 44.8 1.2 0.2, 578.0 -0.13
PWK/PhJ f 36.0 39.6   20 8.85 1.1 0.4, 151.0 -0.48
PWK/PhJ m 35.3 28.8   22 6.15 0.817 0.1, 102.0 -0.51
WSB/EiJ f 23.0 20.7   18 4.88 0.901 -0.52
WSB/EiJ m 38.6 30.2   15 7.79 0.782 0.5, 104.0 -0.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 249.95 59.87 367.8438 132.0562
129S1/SvImJ m 394.8 61.8334 516.5602 273.0398
A/J f 992.6 59.87 1110.4938 874.7062
A/J m 896.1312 59.87 1014.0251 778.2374
C57BL/6J f 4.925 59.87 122.8188 -112.9688
C57BL/6J m 11.55 59.87 129.4438 -106.3438
CAST/EiJ f 17.6316 54.9404 125.8184 -90.5552
CAST/EiJ m 18.6944 56.4459 129.8458 -92.4569
NOD/ShiLtJ f 3.75 56.4459 114.9014 -107.4014
NOD/ShiLtJ m 6.7187 59.87 124.6126 -111.1751
NZO/HlLtJ f 267.6647 58.0824 382.0385 153.2909
NZO/HlLtJ m 154.4 58.0824 268.7738 40.0262
PWK/PhJ f 36.02 53.5493 141.4675 -69.4275
PWK/PhJ m 35.2909 51.0573 135.8311 -65.2493
WSB/EiJ f 22.9833 56.4459 134.1347 -88.1681
WSB/EiJ m 38.6133 61.8334 160.3736 -83.1469


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 322.375 43.0342 407.1165 237.6335
A/J both 944.3656 42.3344 1027.7292 861.0021
C57BL/6J both 8.2375 42.3344 91.601 -75.126
CAST/EiJ both 18.163 39.3846 95.7179 -59.3918
NOD/ShiLtJ both 5.2344 41.1417 86.2492 -75.7804
NZO/HlLtJ both 211.0324 41.0704 291.9069 130.1578
PWK/PhJ both 35.6555 36.9945 108.5038 -37.1928
WSB/EiJ both 30.7983 41.8614 113.2304 -51.6337




  GWAS USING LINEAR MIXED MODELS