Project measure / variable:   GMC01   center_permanence

ID, description, units MPD:55043   center_permanence   permanence time in center of arena, 20 min test   [s]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - permanence time in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means140   s 128   s
Median of the strain means152   s 142   s
SD of the strain means± 118 ± 98.9
Coefficient of variation (CV)0.842 0.772
Min–max range of strain means1.24   –   366   s 2.08   –   280   s
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14736.8909 14736.8909 5.6907 0.0178
strain 7 2696177.2073 385168.1725 148.7339 < 0.0001
sex:strain 7 67788.3298 9684.0471 3.7395 0.0007
Residuals 259 670718.3016 2589.646


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 25.3 34.2   16 8.55 1.35 -0.97
129S1/SvImJ m 8.15 9.78   15 2.52 1.2 -1.21
A/J f 1.24 3.07   16 0.768 2.47 -1.18
A/J m 2.08 5.32   16 1.33 2.55 -1.27
C57BL/6J f 195.0 57.3   16 14.3 0.294 122.0, 312.0 0.47
C57BL/6J m 209.0 43.0   16 10.7 0.205 150.0, 336.0 0.82
CAST/EiJ f 163.0 35.1   19 8.05 0.215 83.8, 228.0 0.2
CAST/EiJ m 182.0 54.9   18 13.0 0.302 81.2, 277.0 0.55
NOD/ShiLtJ f 366.0 97.7   18 23.0 0.267 227.0, 568.0 1.92
NOD/ShiLtJ m 280.0 48.2   16 12.1 0.172 198.0, 356.0 1.54
NZO/HlLtJ f 47.3 66.0   17 16.0 1.4 -0.79
NZO/HlLtJ m 58.8 55.8   17 13.5 0.949 1.0, 208.0 -0.7
PWK/PhJ f 142.0 36.6   20 8.18 0.259 87.5, 214.0 0.02
PWK/PhJ m 127.0 32.7   22 6.96 0.257 74.6, 172.0 -0.01
WSB/EiJ f 179.0 40.1   18 9.45 0.224 91.2, 277.0 0.33
WSB/EiJ m 157.0 88.2   15 22.8 0.563 68.8, 347.0 0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 25.3375 12.7221 50.3895 0.2855
129S1/SvImJ m 8.1467 13.1394 34.0203 -17.7269
A/J f 1.2437 12.7221 26.2958 -23.8083
A/J m 2.0812 12.7221 27.1333 -22.9708
C57BL/6J f 195.15 12.7221 220.202 170.098
C57BL/6J m 209.4 12.7221 234.452 184.348
CAST/EiJ f 163.2474 11.6746 186.2367 140.2581
CAST/EiJ m 181.8111 11.9945 205.4304 158.1919
NOD/ShiLtJ f 366.3944 11.9945 390.0137 342.7752
NOD/ShiLtJ m 280.3438 12.7221 305.3958 255.2917
NZO/HlLtJ f 47.2529 12.3423 71.557 22.9489
NZO/HlLtJ m 58.8 12.3423 83.104 34.496
PWK/PhJ f 141.525 11.379 163.9322 119.1178
PWK/PhJ m 126.9636 10.8495 148.3281 105.5992
WSB/EiJ f 178.9833 11.9945 202.6026 155.3641
WSB/EiJ m 156.5667 13.1394 182.4403 130.6931


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.7421 9.1446 34.7493 -1.2652
A/J both 1.6625 8.9959 19.3769 -16.0519
C57BL/6J both 202.275 8.9959 219.9894 184.5606
CAST/EiJ both 172.5292 8.3691 189.0094 156.0491
NOD/ShiLtJ both 323.3691 8.7425 340.5844 306.1538
NZO/HlLtJ both 53.0265 8.7273 70.212 35.8409
PWK/PhJ both 134.2443 7.8612 149.7243 118.7643
WSB/EiJ both 167.775 8.8954 185.2915 150.2585




  GWAS USING LINEAR MIXED MODELS