Project measure / variable:   HMDPpheno7   thiamin

ID, description, units MPD:50238   thiamin   thiamin (Vitamin B1) (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - thiamin (Vitamin B1) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means141763   None
Median of the strain means136224   None
SD of the strain means± 38507
Coefficient of variation (CV)0.272
Min–max range of strain means65619   –   291469   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 33531134784.2049 1596720704.0098 1.5927 0.1108
Residuals 34 34086720121.9663 1002550591.8225


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 133965.0 0.0   1   0.0 0.0 133965.0, 133965.0 -0.2
A/J m 155033.0 49285.0   2   34850.0 0.318 120183.0, 189883.0 0.34
AKR/J m 142032.0 0.0   1   0.0 0.0 142032.0, 142032.0 0.01
AXB10/PgnJ m 203360.0 0.0   1   0.0 0.0 203360.0, 203360.0 1.6
AXB12/PgnJ m 143841.0 0.0   1   0.0 0.0 143841.0, 143841.0 0.05
AXB13/PgnJ m 190589.0 0.0   1   0.0 0.0 190589.0, 190589.0 1.27
AXB15/PgnJ m 188524.0 0.0   1   0.0 0.0 188524.0, 188524.0 1.21
AXB19a/PgnJ m 119054.0 0.0   1   0.0 0.0 119054.0, 119054.0 -0.59
AXB19b/PgnJ m 181439.0 51246.0   2   36237.0 0.282 145203.0, 217676.0 1.03
AXB19/PgnJ m 202525.0 0.0   1   0.0 0.0 202525.0, 202525.0 1.58
AXB1/PgnJ m 100050.0 0.0   1   0.0 0.0 100050.0, 100050.0 -1.08
AXB23/PgnJ m 120097.0 0.0   1   0.0 0.0 120097.0, 120097.0 -0.56
AXB24/PgnJ m 138978.0 58559.0   2   41408.0 0.421 97570.0, 180385.0 -0.07
AXB2/PgnJ m 93534.0 0.0   1   0.0 0.0 93534.0, 93534.0 -1.25
AXB4/PgnJ m 87218.0 0.0   1   0.0 0.0 87218.0, 87218.0 -1.42
AXB5/PgnJ m 120746.0 0.0   1   0.0 0.0 120746.0, 120746.0 -0.55
AXB6/PgnJ m 155094.0 0.0   1   0.0 0.0 155094.0, 155094.0 0.35
AXB8/PgnJ m 175848.0 0.0   1   0.0 0.0 175848.0, 175848.0 0.89
BALB/cJ m 125026.0 21590.0   3 12465.0 0.173 106757.0, 148851.0 -0.43
BTBR T+ Itpr3tf/J m 138916.0 0.0   1   0.0 0.0 138916.0, 138916.0 -0.07
BUB/BnJ m 86980.0 0.0   1   0.0 0.0 86980.0, 86980.0 -1.42
BXA11/PgnJ m 167209.0 0.0   1   0.0 0.0 167209.0, 167209.0 0.66
BXA12/PgnJ m 65619.0 0.0   1   0.0 0.0 65619.0, 65619.0 -1.98
BXA13/PgnJ m 136033.0 0.0   1   0.0 0.0 136033.0, 136033.0 -0.15
BXA14/PgnJ m 197611.0 0.0   1   0.0 0.0 197611.0, 197611.0 1.45
BXA16/PgnJ m 133439.0 56588.0   2   40014.0 0.424 93425.0, 173452.0 -0.22
BXA1/PgnJ m 291469.0 0.0   1   0.0 0.0 291469.0, 291469.0 3.89
BXA24/PgnJ m 191334.0 0.0   1   0.0 0.0 191334.0, 191334.0 1.29
BXA25/PgnJ m 117887.0 0.0   1   0.0 0.0 117887.0, 117887.0 -0.62
BXA26/PgnJ m 111516.0 0.0   1   0.0 0.0 111516.0, 111516.0 -0.79
BXA2/PgnJ m 159574.0 0.0   1   0.0 0.0 159574.0, 159574.0 0.46
BXA4/PgnJ m 82816.0 0.0   1   0.0 0.0 82816.0, 82816.0 -1.53
BXA7/PgnJ m 135749.0 0.0   1   0.0 0.0 135749.0, 135749.0 -0.16
BXA8/PgnJ m 195623.0 0.0   1   0.0 0.0 195623.0, 195623.0 1.4
BXD11/TyJ m 146548.0 0.0   1   0.0 0.0 146548.0, 146548.0 0.12
BXD12/TyJ m 125083.0 0.0   1   0.0 0.0 125083.0, 125083.0 -0.43
BXD13/TyJ m 166662.0 0.0   1   0.0 0.0 166662.0, 166662.0 0.65
BXD14/TyJ m 209140.0 0.0   1   0.0 0.0 209140.0, 209140.0 1.75
BXD15/TyJ m 82432.0 0.0   1   0.0 0.0 82432.0, 82432.0 -1.54
BXD18/TyJ m 108399.0 0.0   1   0.0 0.0 108399.0, 108399.0 -0.87
BXD19/TyJ m 177808.0 145.0   2   103.0 0.000816 177705.0, 177911.0 0.94
BXD1/TyJ m 124394.0 0.0   1   0.0 0.0 124394.0, 124394.0 -0.45
BXD20/TyJ m 119298.0 0.0   1   0.0 0.0 119298.0, 119298.0 -0.58
BXD21/TyJ m 105608.0 0.0   1   0.0 0.0 105608.0, 105608.0 -0.94
BXD22/TyJ m 92081.0 0.0   1   0.0 0.0 92081.0, 92081.0 -1.29
BXD24/TyJ m 129474.0 0.0   1   0.0 0.0 129474.0, 129474.0 -0.32
BXD24/TyJ-Cep290rd16/J m 99076.0 0.0   1   0.0 0.0 99076.0, 99076.0 -1.11
BXD28/TyJ m 138850.0 1579.0   2   1116.0 0.0114 137734.0, 139967.0 -0.08
BXD29-Tlr4lps-2J/J m 122766.0 0.0   1   0.0 0.0 122766.0, 122766.0 -0.49
BXD2/TyJ m 139989.0 0.0   1   0.0 0.0 139989.0, 139989.0 -0.05
BXD32/TyJ m 137757.0 0.0   1   0.0 0.0 137757.0, 137757.0 -0.1
BXD33/TyJ m 111870.0 0.0   1   0.0 0.0 111870.0, 111870.0 -0.78
BXD34/TyJ m 135468.0 0.0   1   0.0 0.0 135468.0, 135468.0 -0.16
BXD36/TyJ m 145266.0 0.0   1   0.0 0.0 145266.0, 145266.0 0.09
BXD38/TyJ m 148914.0 0.0   1   0.0 0.0 148914.0, 148914.0 0.19
BXD39/TyJ m 203348.0 0.0   1   0.0 0.0 203348.0, 203348.0 1.6
BXD40/TyJ m 189199.0 0.0   1   0.0 0.0 189199.0, 189199.0 1.23
BXD42/TyJ m 128501.0 0.0   1   0.0 0.0 128501.0, 128501.0 -0.34
BXD5/TyJ m 179202.0 0.0   1   0.0 0.0 179202.0, 179202.0 0.97
BXD6/TyJ m 136415.0 0.0   1   0.0 0.0 136415.0, 136415.0 -0.14
BXD8/TyJ m 70328.0 0.0   1   0.0 0.0 70328.0, 70328.0 -1.86
BXD9/TyJ m 174392.0 0.0   1   0.0 0.0 174392.0, 174392.0 0.85
BXH10/TyJ m 164092.0 0.0   1   0.0 0.0 164092.0, 164092.0 0.58
BXH19/TyJ m 132847.0 0.0   1   0.0 0.0 132847.0, 132847.0 -0.23
BXH20/KccJ m 222929.0 0.0   1   0.0 0.0 222929.0, 222929.0 2.11
BXH22/KccJ m 159850.0 0.0   1   0.0 0.0 159850.0, 159850.0 0.47
BXH2/TyJ m 129918.0 0.0   1   0.0 0.0 129918.0, 129918.0 -0.31
BXH4/TyJ m 201000.0 13809.0   2   9764.0 0.0687 191236.0, 210765.0 1.54
BXH6/TyJ m 204751.0 0.0   1   0.0 0.0 204751.0, 204751.0 1.64
BXH7/TyJ m 96199.0 0.0   1   0.0 0.0 96199.0, 96199.0 -1.18
BXH8/TyJ m 161950.0 0.0   1   0.0 0.0 161950.0, 161950.0 0.52
BXH9/TyJ m 107974.0 0.0   1   0.0 0.0 107974.0, 107974.0 -0.88
C3H/HeJ m 155610.0 27263.0   2   19278.0 0.175 136331.0, 174888.0 0.36
C57BL/6J m 127099.0 18596.0   5 8316.0 0.146 97456.0, 143440.0 -0.38
C57L/J m 95199.0 0.0   1   0.0 0.0 95199.0, 95199.0 -1.21
C58/J m 116974.0 0.0   1   0.0 0.0 116974.0, 116974.0 -0.64
CAST/EiJ m 208796.0 0.0   1   0.0 0.0 208796.0, 208796.0 1.74
CBA/J m 145311.0 0.0   1   0.0 0.0 145311.0, 145311.0 0.09
CE/J m 117977.0 0.0   1   0.0 0.0 117977.0, 117977.0 -0.62
CXB11/HiAJ m 176936.0 63434.0   2   44854.0 0.359 132082.0, 221791.0 0.91
CXB12/HiAJ m 125012.0 27537.0   2   19472.0 0.22 105540.0, 144484.0 -0.44
CXB13/HiAJ m 112036.0 32610.0   3 18828.0 0.291 88906.0, 149334.0 -0.77
CXB1/ByJ m 148015.0 37394.0   3 21589.0 0.253 116085.0, 189153.0 0.16
CXB2/ByJ m 112232.0 40447.0   3 23352.0 0.36 65911.0, 140559.0 -0.77
CXB3/ByJ m 182401.0 26816.0   2   18962.0 0.147 163440.0, 201363.0 1.06
CXB4/ByJ m 160850.0 123.0   2   86.9 0.000764 160763.0, 160936.0 0.5
CXB6/ByJ m 114628.0 27777.0   3 16037.0 0.242 90332.0, 144910.0 -0.7
CXB7/ByJ m 141351.0 58.9   2   41.7 0.000417 141309.0, 141392.0 -0.01
CXB8/HiAJ m 141119.0 20394.0   3 11775.0 0.145 118036.0, 156701.0 -0.02
CXB9/HiAJ m 175156.0 19514.0   3 11266.0 0.111 157758.0, 196255.0 0.87
DBA/2J m 132618.0 27778.0   4 13889.0 0.209 104602.0, 163450.0 -0.24
FVB/NJ m 68751.0 0.0   1   0.0 0.0 68751.0, 68751.0 -1.9
I/LnJ m 114897.0 0.0   1   0.0 0.0 114897.0, 114897.0 -0.7
KK/HlJ m 148774.0 0.0   1   0.0 0.0 148774.0, 148774.0 0.18
LG/J m 122345.0 0.0   1   0.0 0.0 122345.0, 122345.0 -0.5
LP/J m 87396.0 0.0   1   0.0 0.0 87396.0, 87396.0 -1.41
MA/MyJ m 112173.0 0.0   1   0.0 0.0 112173.0, 112173.0 -0.77
NOD/ShiLtJ m 96793.0 0.0   1   0.0 0.0 96793.0, 96793.0 -1.17
NON/ShiLtJ m 148240.0 0.0   1   0.0 0.0 148240.0, 148240.0 0.17
NZW/LacJ m 183172.0 0.0   1   0.0 0.0 183172.0, 183172.0 1.08
PL/J m 174418.0 0.0   1   0.0 0.0 174418.0, 174418.0 0.85
RIIIS/J m 117689.0 0.0   1   0.0 0.0 117689.0, 117689.0 -0.63
SEA/GnJ m 179482.0 0.0   1   0.0 0.0 179482.0, 179482.0 0.98
SJL/J m 110685.0 0.0   1   0.0 0.0 110685.0, 110685.0 -0.81
SM/J m 125639.0 0.0   1   0.0 0.0 125639.0, 125639.0 -0.42
SWR/J m 128614.0 0.0   1   0.0 0.0 128614.0, 128614.0 -0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 155032.7 22389.1781 200532.9843 109532.4157
AXB19b/PgnJ m 181439.2 22389.1781 226939.4843 135938.9157
AXB24/PgnJ m 138977.5 22389.1781 184477.7843 93477.2157
BALB/cJ m 125025.8667 18280.6874 162176.6932 87875.0401
BXA16/PgnJ m 133438.95 22389.1781 178939.2343 87938.6657
BXD19/TyJ m 177807.95 22389.1781 223308.2343 132307.6657
BXD28/TyJ m 138850.4 22389.1781 184350.6843 93350.1157
BXH4/TyJ m 201000.35 22389.1781 246500.6343 155500.0657
C3H/HeJ m 155609.55 22389.1781 201109.8343 110109.2657
C57BL/6J m 127099.18 14160.1595 155876.0865 98322.2735
CXB11/HiAJ m 176936.4 22389.1781 222436.6843 131436.1157
CXB12/HiAJ m 125012.05 22389.1781 170512.3343 79511.7657
CXB13/HiAJ m 112035.7 18280.6874 149186.5265 74884.8735
CXB1/ByJ m 148015.0667 18280.6874 185165.8932 110864.2401
CXB2/ByJ m 112232.5 18280.6874 149383.3265 75081.6735
CXB3/ByJ m 182401.35 22389.1781 227901.6343 136901.0657
CXB4/ByJ m 160849.5 22389.1781 206349.7843 115349.2157
CXB6/ByJ m 114627.8 18280.6874 151778.6265 77476.9735
CXB7/ByJ m 141350.55 22389.1781 186850.8343 95850.2657
CXB8/HiAJ m 141118.5 18280.6874 178269.3265 103967.6735
CXB9/HiAJ m 175155.8 18280.6874 212306.6265 138004.9735
DBA/2J m 132618.45 15831.5397 164792.0095 100444.8905




  GWAS USING LINEAR MIXED MODELS