Project measure / variable:   Tarantino1   dist_diff

ID, description, units MPD:45913   dist_diff   distance traveled, 30 min test   [cm]  difference  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - distance traveled, 30 min test difference



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means13511   cm
Median of the strain means11150   cm
SD of the strain means± 9071
Coefficient of variation (CV)0.671
Min–max range of strain means-171   –   40999   cm
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 61293931745.8361 1393043903.3145 20.736 < 0.0001
Residuals 793 53273703908.3953 67179954.4873


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 2629.0 4709.0   20 1053.0 1.79 -1248.0, 12757.0 -1.2
A/J m 2337.0 5070.0   23 1057.0 2.17 -2843.0, 16491.0 -1.23
AKR/J m 14899.0 9825.0   20 2197.0 0.659 -2585.0, 28973.0 0.15
BALB/cByJ m 2566.0 5620.0   18 1325.0 2.19 -4479.0, 17166.0 -1.21
BTBR T+ Itpr3tf/J m 5681.0 7636.0   19 1752.0 1.34 -2319.0, 22086.0 -0.86
BUB/BnJ m 9259.0 7489.0   17 1816.0 0.809 -9301.0, 24388.0 -0.47
C3H/HeJ m 12501.0 6831.0   20 1527.0 0.546 1536.0, 25696.0 -0.11
C57BL/6J m 16474.0 7441.0   52 1032.0 0.452 2462.0, 32847.0 0.33
C57BLKS/J m 11826.0 8448.0   20 1889.0 0.714 -1092.0, 29346.0 -0.19
C57BR/cdJ m 40999.0 7490.0   16 1872.0 0.183 27314.0, 57637.0 3.03
C57L/J m 33167.0 8244.0   18 1943.0 0.249 22746.0, 49858.0 2.17
C58/J m 28408.0 4732.0   16 1183.0 0.167 18816.0, 34539.0 1.64
CBA/J m 9698.0 6330.0   20 1415.0 0.653 -345.0, 22791.0 -0.42
CE/J m 15319.0 6139.0   18 1447.0 0.401 5298.0, 28192.0 0.2
CZECHII/EiJ m 15016.0 14604.0   18 3442.0 0.973 -2488.0, 50232.0 0.17
DBA/2J m 10100.0 10848.0   18 2557.0 1.07 -3548.0, 33984.0 -0.38
DDY/JclSidSeyFrkJ m 20803.0 9526.0   16 2382.0 0.458 5407.0, 36098.0 0.8
FVB/NJ m 3956.0 4996.0   20 1117.0 1.26 -4184.0, 13549.0 -1.05
I/LnJ m 28517.0 7258.0   15 1874.0 0.255 15013.0, 42420.0 1.65
KK/HlJ m 11150.0 6667.0   15 1721.0 0.598 1422.0, 22595.0 -0.26
LG/J m -171.0 2426.0   19 557.0 -14.2 -3160.0, 4795.0 -1.51
LP/J m 2352.0 3611.0   20 807.0 1.54 -1133.0, 10482.0 -1.23
MA/MyJ m 9353.0 7850.0   16 1962.0 0.839 -4215.0, 19143.0 -0.46
MOLF/EiJ m 15659.0 12848.0   16 3212.0 0.82 -975.0, 45234.0 0.24
MRL/MpJ m 9623.0 5720.0   19 1312.0 0.594 -2682.0, 22858.0 -0.43
MSM/MsJ m 19726.0 15417.0   18 3634.0 0.782 -3760.0, 49016.0 0.69
NOD/ShiLtJ m 14414.0 4589.0   19 1053.0 0.318 4637.0, 21444.0 0.1
NON/ShiLtJ m 15117.0 7823.0   20 1749.0 0.517 3749.0, 27076.0 0.18
NOR/LtJ m 10874.0 5970.0   20 1335.0 0.549 -5424.0, 20515.0 -0.29
NZB/BlNJ m 15442.0 9789.0   18 2307.0 0.634 -8.26, 31955.0 0.21
NZO/HlLtJ m 7060.0 4934.0   16 1233.0 0.699 764.0, 15780.0 -0.71
NZW/LacJ m 4679.0 3750.0   19 860.0 0.801 -594.0, 11441.0 -0.97
PERA/EiJ m 8378.0 5206.0   15 1344.0 0.621 3864.0, 21544.0 -0.57
P/J m 33837.0 4645.0   12 1341.0 0.137 25275.0, 40457.0 2.24
PL/J m 21432.0 12007.0   19 2754.0 0.56 1363.0, 39399.0 0.87
PWD/PhJ m 23926.0 16080.0   15 4152.0 0.672 5686.0, 54805.0 1.15
RIIIS/J m 9661.0 8774.0   15 2266.0 0.908 -1310.0, 22800.0 -0.42
SEA/GnJ m 15371.0 7513.0   15 1940.0 0.489 -1419.0, 27753.0 0.21
SJL/J m 8990.0 9440.0   24 1927.0 1.05 -2163.0, 30112.0 -0.5
SKIVE/EiJ m 23226.0 13342.0   18 3145.0 0.574 6138.0, 47100.0 1.07
SM/J m 7992.0 7208.0   19 1654.0 0.902 -1956.0, 28406.0 -0.61
SWR/J m 11990.0 5601.0   17 1358.0 0.467 1186.0, 22445.0 -0.17
TALLYHO/JngJ m 8034.0 5834.0   16 1458.0 0.726 -135.0, 17734.0 -0.6
WSB/EiJ m 8576.0 9602.0   17 2329.0 1.12 -2521.0, 29791.0 -0.54
ZALENDE/EiJ m 7147.0 4323.0   17 1048.0 0.605 1079.0, 16090.0 -0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 2628.9375 1832.7569 6226.5659 -968.6909
A/J m 2336.8174 1709.0546 5691.6232 -1017.9884
AKR/J m 14898.7 1832.7569 18496.3284 11301.0716
BALB/cByJ m 2566.2778 1931.8954 6358.5111 -1225.9555
BTBR T+ Itpr3tf/J m 5681.4632 1880.3689 9372.552 1990.3743
BUB/BnJ m 9259.4118 1987.9039 13161.5876 5357.2359
C3H/HeJ m 12501.15 1832.7569 16098.7784 8903.5216
C57BL/6J m 16473.8462 1136.6276 18705.0006 14242.6917
C57BLKS/J m 11825.7 1832.7569 15423.3284 8228.0716
C57BR/cdJ m 40998.6875 2049.0845 45020.9583 36976.4167
C57L/J m 33166.7778 1931.8954 36959.0111 29374.5445
C58/J m 28408.4375 2049.0845 32430.7083 24386.1667
CBA/J m 9698.5 1832.7569 13296.1284 6100.8716
CE/J m 15318.7222 1931.8954 19110.9555 11526.4889
CZECHII/EiJ m 15016.2778 1931.8954 18808.5111 11224.0445
DBA/2J m 10100.2389 1931.8954 13892.4722 6308.0056
DDY/JclSidSeyFrkJ m 20803.3125 2049.0845 24825.5833 16781.0417
FVB/NJ m 3955.995 1832.7569 7553.6234 358.3666
I/LnJ m 28517.1333 2116.2853 32671.3168 24362.9499
KK/HlJ m 11150.4 2116.2853 15304.5835 6996.2165
LG/J m -170.5737 1880.3689 3520.5152 -3861.6625
LP/J m 2351.55 1832.7569 5949.1784 -1246.0784
MA/MyJ m 9352.875 2049.0845 13375.1458 5330.6042
MOLF/EiJ m 15659.0 2049.0845 19681.2708 11636.7292
MRL/MpJ m 9623.4211 1880.3689 13314.5099 5932.3322
MSM/MsJ m 19726.1667 1931.8954 23518.4 15933.9334
NOD/ShiLtJ m 14414.4211 1880.3689 18105.5099 10723.3322
NON/ShiLtJ m 15117.45 1832.7569 18715.0784 11519.8216
NOR/LtJ m 10873.55 1832.7569 14471.1784 7275.9216
NZB/BlNJ m 15441.93 1931.8954 19234.1633 11649.6967
NZO/HlLtJ m 7059.625 2049.0845 11081.8958 3037.3542
NZW/LacJ m 4678.7895 1880.3689 8369.8783 987.7006
PERA/EiJ m 8378.0667 2116.2853 12532.2501 4223.8832
P/J m 33837.0833 2366.0789 38481.6016 29192.565
PL/J m 21431.5263 1880.3689 25122.6152 17740.4375
PWD/PhJ m 23925.8 2116.2853 28079.9835 19771.6165
RIIIS/J m 9661.2667 2116.2853 13815.4501 5507.0832
SEA/GnJ m 15370.9333 2116.2853 19525.1168 11216.7499
SJL/J m 8989.7083 1673.0705 12273.8787 5705.538
SKIVE/EiJ m 23226.0 1931.8954 27018.2333 19433.7667
SM/J m 7991.6842 1880.3689 11682.7731 4300.5954
SWR/J m 11989.7647 1987.9039 15891.9406 8087.5888
TALLYHO/JngJ m 8033.6875 2049.0845 12055.9583 4011.4167
WSB/EiJ m 8575.8471 1987.9039 12478.0229 4673.6712
ZALENDE/EiJ m 7147.0588 1987.9039 11049.2347 3244.8829




  GWAS USING LINEAR MIXED MODELS