Project measure / variable:   Gupta1   area_kidneyL

ID, description, units MPD:39109   area_kidneyL   kidney planar surface area   [mm2]  left  
Data set, strains Gupta1   inbred   8 strains     sex: both     age: postnatal d1
Procedure organ dimensions
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  STRAIN COMPARISON PLOT
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Gupta1 - kidney planar surface area left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains8 strains
Mean of the strain means5.10   mm2 5.30   mm2
Median of the strain means5.05   mm2 5.39   mm2
SD of the strain means± 0.327 ± 0.464
Coefficient of variation (CV)0.0642 0.0877
Min–max range of strain means4.66   –   5.64   mm2 4.26   –   5.76   mm2
Mean sample size per strain7.9   mice 10.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.4696 2.4696 8.8205 0.0037
strain 6 4.4753 0.7459 2.664 0.0189
sex:strain 6 2.4309 0.4051 1.447 0.2035
Residuals 108 30.2386 0.28


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.64 0.458   10 0.145 0.0813 4.86, 6.41 1.65
129S1/SvImJ m 5.57 0.502   7 0.19 0.09 4.77, 6.22 0.59
AKR/J f 5.03 0.368   4 0.184 0.073 4.68, 5.53 -0.21
AKR/J m 5.76 0.423   15 0.109 0.0734 5.01, 6.35 1.0
C3H/HeJ m 4.26 0.743   15 0.192 0.174 3.22, 5.17 -2.23
CBA/J f 4.86 0.489   4 0.244 0.101 4.43, 5.29 -0.73
CBA/J m 5.48 0.779   9 0.26 0.142 4.63, 6.64 0.39
DBA/2J f 5.4 0.337   5 0.151 0.0623 5.07, 5.89 0.92
DBA/2J m 5.18 0.0099   2   0.007 0.00191 5.17, 5.18 -0.25
FVB/NJ f 5.05 0.525   18 0.124 0.104 3.95, 5.72 -0.15
FVB/NJ m 5.22 0.483   20 0.108 0.0925 4.27, 6.13 -0.17
SJL/J f 4.66 0.885   2   0.626 0.19 4.04, 5.29 -1.34
SJL/J m 5.6 0.261   3 0.151 0.0467 5.3, 5.79 0.65
SM/J f 5.05 0.411   12 0.119 0.0815 4.28, 5.61 -0.15
SM/J m 5.31 0.775   11 0.234 0.146 4.16, 6.56 0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.6379 0.1673 5.9696 5.3062
129S1/SvImJ m 5.5749 0.2 5.9713 5.1784
AKR/J f 5.0327 0.2646 5.5572 4.5083
AKR/J m 5.759 0.1366 6.0298 5.4882
CBA/J f 4.8597 0.2646 5.3842 4.3353
CBA/J m 5.4833 0.1764 5.8329 5.1337
DBA/2J f 5.405 0.2366 5.8741 4.9359
DBA/2J m 5.177 0.3742 5.9186 4.4354
FVB/NJ f 5.0472 0.1247 5.2944 4.8
FVB/NJ m 5.221 0.1183 5.4556 4.9865
SJL/J f 4.662 0.3742 5.4036 3.9204
SJL/J m 5.5967 0.3055 6.2022 4.9911
SM/J f 5.0467 0.1527 5.3495 4.744
SM/J m 5.3129 0.1595 5.6291 4.9967


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.6064 0.1304 5.8648 5.3479
AKR/J both 5.3959 0.1489 5.691 5.1008
CBA/J both 5.1715 0.159 5.4867 4.8564
DBA/2J both 5.291 0.2214 5.7298 4.8522
FVB/NJ both 5.1341 0.086 5.3045 4.9637
SJL/J both 5.1293 0.2415 5.6081 4.6506
SM/J both 5.1798 0.1104 5.3987 4.9609




  GWAS USING LINEAR MIXED MODELS