Project measure / variable:   Reed1   kidneys

ID, description, units MPD:32609   kidneys   kidney weight   [g]  weight [g]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Reed1 - kidney weight weight [g]



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means0.568   g
Median of the strain means0.566   g
SD of the strain means± 0.124
Coefficient of variation (CV)0.218
Min–max range of strain means0.365   –   0.795   g
Mean sample size per strain11.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 4.7548 0.1761 45.2395 < 0.0001
Residuals 294 1.1444 0.0039


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 0.491 0.0633   12 0.0183 0.129 0.4, 0.63 -0.62
A/J m 0.392 0.0396   12 0.0114 0.101 0.33, 0.45 -1.42
AKR/J m 0.562 0.0737   11 0.0222 0.131 0.46, 0.72 -0.05
BALB/cByJ m 0.669 0.0672   10 0.0213 0.101 0.54, 0.77 0.82
BUB/BnJ m 0.587 0.0542   11 0.0164 0.0924 0.49, 0.66 0.15
C3H/HeJ m 0.523 0.0671   12 0.0194 0.128 0.4, 0.66 -0.36
C57BL/6J m 0.394 0.0284   10 0.00897 0.072 0.36, 0.45 -1.41
C57L/J m 0.511 0.0545   12 0.0157 0.107 0.44, 0.61 -0.46
CAST/EiJ m 0.365 0.0434   11 0.0131 0.119 0.3, 0.43 -1.64
CBA/J m 0.616 0.056   12 0.0162 0.0909 0.55, 0.7 0.39
CE/J m 0.795 0.0674   12 0.0194 0.0847 0.68, 0.9 1.83
DBA/2J m 0.665 0.0979   12 0.0283 0.147 0.49, 0.8 0.78
FVB/NJ m 0.493 0.0498   12 0.0144 0.101 0.4, 0.59 -0.61
I/LnJ m 0.716 0.0317   11 0.00956 0.0443 0.65, 0.77 1.2
KK/HlJ m 0.658 0.0726   12 0.021 0.11 0.58, 0.81 0.73
LP/J m 0.612 0.0687   12 0.0198 0.112 0.52, 0.74 0.35
NOD/ShiLtJ m 0.562 0.0476   10 0.015 0.0846 0.49, 0.64 -0.05
NZB/BlNJ m 0.524 0.0401   11 0.0121 0.0765 0.47, 0.61 -0.36
P/J m 0.676 0.0999   11 0.0301 0.148 0.51, 0.87 0.87
PL/J m 0.431 0.0432   11 0.013 0.1 0.38, 0.51 -1.11
RBF/DnJ m 0.741 0.101   11 0.0306 0.137 0.53, 0.89 1.4
RF/J m 0.713 0.0848   12 0.0245 0.119 0.54, 0.84 1.17
RIIIS/J m 0.404 0.0215   12 0.00621 0.0532 0.37, 0.44 -1.33
SEA/GnJ m 0.625 0.0826   12 0.0239 0.132 0.47, 0.76 0.46
SJL/J m 0.569 0.0578   12 0.0167 0.101 0.48, 0.64 0.01
SM/J m 0.754 0.0509   12 0.0147 0.0675 0.69, 0.83 1.5
SPRET/EiJ m 0.399 0.038   12 0.011 0.0952 0.35, 0.47 -1.37
SWR/J m 0.46 0.0369   12 0.0107 0.0803 0.4, 0.52 -0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 0.4908 0.018 0.5263 0.4554
A/J m 0.3925 0.018 0.4279 0.3571
AKR/J m 0.5618 0.0188 0.5988 0.5248
BALB/cByJ m 0.669 0.0197 0.7078 0.6302
BUB/BnJ m 0.5873 0.0188 0.6243 0.5503
C3H/HeJ m 0.5233 0.018 0.5588 0.4879
C57BL/6J m 0.394 0.0197 0.4328 0.3552
C57L/J m 0.5108 0.018 0.5463 0.4754
CAST/EiJ m 0.3645 0.0188 0.4016 0.3275
CBA/J m 0.6158 0.018 0.6513 0.5804
CE/J m 0.795 0.018 0.8304 0.7596
DBA/2J m 0.665 0.018 0.7004 0.6296
FVB/NJ m 0.4933 0.018 0.5288 0.4579
I/LnJ m 0.7164 0.0188 0.7534 0.6793
KK/HlJ m 0.6575 0.018 0.6929 0.6221
LP/J m 0.6117 0.018 0.6471 0.5762
NOD/ShiLtJ m 0.562 0.0197 0.6008 0.5232
NZB/BlNJ m 0.5236 0.0188 0.5607 0.4866
P/J m 0.6764 0.0188 0.7134 0.6393
PL/J m 0.4309 0.0188 0.4679 0.3939
RBF/DnJ m 0.7409 0.0188 0.7779 0.7039
RF/J m 0.7133 0.018 0.7488 0.6779
RIIIS/J m 0.4042 0.018 0.4396 0.3687
SEA/GnJ m 0.625 0.018 0.6604 0.5896
SJL/J m 0.5692 0.018 0.6046 0.5337
SM/J m 0.7542 0.018 0.7896 0.7187
SPRET/EiJ m 0.3992 0.018 0.4346 0.3637
SWR/J m 0.46 0.018 0.4954 0.4246




  GWAS USING LINEAR MIXED MODELS