Project measure / variable:   Jaxpheno6   pct_B_8

ID, description, units MPD:23109   pct_B_8   splenic B cells (percentage of total viable cells)   [%]  at age age 8wks  
Data set, strains Jaxpheno6   inbred   11 strains     sex: both     age: 8wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic B cells (percentage of total viable cells) at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means48.5   % 49.2   %
Median of the strain means55.1   % 51.0   %
SD of the strain means± 16.3 ± 16.7
Coefficient of variation (CV)0.335 0.339
Min–max range of strain means3.70   –   65.3   % 2.36   –   65.5   %
Mean sample size per strain8.9   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 101.7059 101.7059 5.71 0.0178
strain 10 43678.9444 4367.8944 245.2257 < 0.0001
sex:strain 10 540.0857 54.0086 3.0322 0.0013
Residuals 207 3687.0285 17.8117


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 55.3 3.06   4 1.53 0.0554 51.5, 58.1 0.42
B6.129P2-Apoetm1Unc/J m 53.2 2.29   5 1.03 0.0431 49.3, 55.1 0.24
B6D2F1/J f 57.0 6.49   10 2.05 0.114 47.2, 67.0 0.52
B6D2F1/J m 65.5 2.14   5 0.957 0.0327 62.9, 67.8 0.97
BALB/cByJ f 43.6 5.37   10 1.7 0.123 31.4, 49.3 -0.3
BALB/cByJ m 48.4 1.98   10 0.625 0.0409 45.6, 50.5 -0.05
BALB/cJ f 53.4 2.33   10 0.736 0.0436 50.6, 58.0 0.3
BALB/cJ m 51.0 3.75   10 1.18 0.0734 45.6, 59.0 0.11
C3H/HeJ f 43.4 5.51   5 2.47 0.127 35.5, 48.4 -0.31
C3H/HeJ m 47.3 5.51   5 2.47 0.117 41.6, 55.0 -0.12
C57BL/6J f 56.1 4.47   30 0.816 0.0797 47.2, 66.9 0.47
C57BL/6J m 57.8 7.22   15 1.86 0.125 41.9, 65.2 0.51
CBA/J f 55.5 3.92   10 1.24 0.0707 49.6, 62.4 0.43
CBA/J m 55.2 4.25   20 0.95 0.077 49.1, 63.3 0.36
DBA/2J f 65.3 5.71   10 1.81 0.0874 54.1, 72.0 1.03
DBA/2J m 62.9 2.84   15 0.732 0.045 56.7, 68.4 0.82
FVB/NJ f 55.1 1.91   5 0.855 0.0347 52.9, 57.0 0.4
FVB/NJ m 51.0 4.07   10 1.29 0.0799 44.8, 55.0 0.11
NOD.CB17-Prkdcscid/J f 3.7 0.778   5 0.348 0.21 2.56, 4.47 -2.76
NOD.CB17-Prkdcscid/J m 2.36 0.38   10 0.12 0.161 1.94, 3.04 -2.81
NOD/ShiLtJ f 45.3 2.83   15 0.73 0.0624 39.8, 51.1 -0.2
NOD/ShiLtJ m 46.8 2.39   10 0.755 0.051 43.7, 51.1 -0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 55.275 2.1102 59.4352 51.1148
B6.129P2-Apoetm1Unc/J m 53.2 1.8874 56.921 49.479
B6D2F1/J f 57.01 1.3346 59.6412 54.3788
B6D2F1/J m 65.48 1.8874 69.201 61.759
BALB/cByJ f 43.58 1.3346 46.2112 40.9488
BALB/cByJ m 48.35 1.3346 50.9812 45.7188
BALB/cJ f 53.43 1.3346 56.0612 50.7988
BALB/cJ m 51.05 1.3346 53.6812 48.4188
C3H/HeJ f 43.44 1.8874 47.161 39.719
C3H/HeJ m 47.32 1.8874 51.041 43.599
C57BL/6J f 56.13 0.7705 57.6491 54.6109
C57BL/6J m 57.8 1.0897 59.9483 55.6517
CBA/J f 55.47 1.3346 58.1012 52.8388
CBA/J m 55.225 0.9437 57.0855 53.3645
DBA/2J f 65.31 1.3346 67.9412 62.6788
DBA/2J m 62.9467 1.0897 65.095 60.7983
FVB/NJ f 55.1 1.8874 58.821 51.379
FVB/NJ m 51.01 1.3346 53.6412 48.3788
NOD.CB17-Prkdcscid/J f 3.702 1.8874 7.423 0.0
NOD.CB17-Prkdcscid/J m 2.359 1.3346 4.9902 0.0
NOD/ShiLtJ f 45.3 1.0897 47.4483 43.1517
NOD/ShiLtJ m 46.83 1.3346 49.4612 44.1988


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 54.2375 1.4156 57.0283 51.4467
B6D2F1/J both 61.245 1.1558 63.5237 58.9663
BALB/cByJ both 45.965 0.9437 47.8255 44.1045
BALB/cJ both 52.24 0.9437 54.1005 50.3795
C3H/HeJ both 45.38 1.3346 48.0112 42.7488
C57BL/6J both 56.965 0.6673 58.2806 55.6494
CBA/J both 55.3475 0.8173 56.9588 53.7362
DBA/2J both 64.1283 0.8615 65.8267 62.4299
FVB/NJ both 53.055 1.1558 55.3337 50.7763
NOD.CB17-Prkdcscid/J both 3.0305 1.1558 5.3092 0.7518
NOD/ShiLtJ both 46.065 0.8615 47.7634 44.3666




  GWAS USING LINEAR MIXED MODELS