Project measure / variable:   Jaxpheno5   bw13

ID, description, units MPD:23011   bw13   body weight   [g]  at age 13 wks  
Data set, strains Jaxpheno5   inbred   10 strains     sex: both     age: 13wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 13 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means22.8   g 28.8   g
Median of the strain means22.9   g 28.4   g
SD of the strain means± 1.17 ± 1.91
Coefficient of variation (CV)0.0515 0.0663
Min–max range of strain means21.2   –   24.8   g 26.0   –   32.0   g
Mean sample size per strain87.1   mice 89.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6739.1022 6739.1022 1782.7828 < 0.0001
strain 6 623.0501 103.8417 27.4706 < 0.0001
sex:strain 6 208.6574 34.7762 9.1998 < 0.0001
Residuals 695 2627.1715 3.7801


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 22.2 1.8   157 0.144 0.081 -0.52
A/J m 26.0 2.2   166 0.171 0.085 -1.46
B6D2F1/J f 23.9 2.49   31 0.447 0.104 19.6, 30.0 0.93
B6D2F1/J m 31.6 2.18   28 0.413 0.069 27.7, 36.6 1.48
B6.SJL-Ptprca Pepcb/BoyJ f 22.9 1.9   95 0.195 0.083 0.08
B6.SJL-Ptprca Pepcb/BoyJ m 29.7 2.3   113 0.216 0.077 0.48
BALB/cByJ f 23.7 1.67   58 0.22 0.0708 19.5, 26.8 0.76
BALB/cByJ m 28.2 1.44   59 0.187 0.0511 25.3, 31.9 -0.3
C57BL/6J f 21.2 1.8   107 0.174 0.0849 17.9, 27.5 -1.37
C57BL/6J m 28.5 1.69   104 0.166 0.0594 24.8, 33.6 -0.15
CBA/J f 23.3 2.72   56 0.363 0.116 17.2, 29.6 0.42
CBA/J m 29.0 2.08   56 0.278 0.0717 23.9, 33.7 0.12
DBA/2J f 21.7 1.79   30 0.326 0.0824 16.7, 24.9 -0.95
DBA/2J m 26.8 2.23   30 0.406 0.0831 22.0, 31.9 -1.04
NOD.CB17-Prkdcscid/J f 21.4 1.3   80 0.145 0.061 -1.2
NOD.CB17-Prkdcscid/J m 28.4 2.0   76 0.229 0.07 -0.2
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 24.8 1.6   196 0.114 0.065 1.69
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 32.0 2.3   200 0.163 0.072 1.69
NOD/ShiLtJ f 23.0 1.6   113 0.151 0.07 0.16
NOD/ShiLtJ m 27.6 1.9   113 0.179 0.069 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 23.8709677419 0.3491973668 24.5565759769 23.185359507
B6D2F1/J m 31.6392857143 0.3674284591 32.360688569 30.9178828596
BALB/cByJ f 23.6586206897 0.2552923554 24.1598574051 23.1573839742
BALB/cByJ m 28.1661016949 0.253119615 28.6630724884 27.6691309014
C57BL/6J f 21.2102803738 0.1879576118 21.5793131866 20.8412475611
C57BL/6J m 28.4913461538 0.1906492659 28.865663715 28.1170285927
CBA/J f 23.3375 0.259811155 23.8476088505 22.8273911495
CBA/J m 29.0196428571 0.259811155 29.5297517077 28.5095340066
DBA/2J f 21.7033333333 0.3549696152 22.4002747036 21.0063919631
DBA/2J m 26.7866666667 0.3549696152 27.4836080369 26.0897252964
NOD.CB17-Prkdcscid/J f 23.06 0.4347472157 23.9135753688 22.2064246312
NOD.CB17-Prkdcscid/J m 29.555 0.4347472157 30.4085753688 28.7014246312
NOD/ShiLtJ f 23.3138461538 0.2411543658 23.7873245784 22.8403677293
NOD/ShiLtJ m 29.54 0.2898314771 30.1090502459 28.9709497541


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 27.7551267281 0.2534474667 28.2527412201 27.2575122361
BALB/cByJ both 25.9123611923 0.1797524174 26.2652840644 25.5594383202
C57BL/6J both 24.8508132638 0.1338611281 25.1136339506 24.5879925771
CBA/J both 26.1785714286 0.1837142295 26.5392728559 25.8178700012
DBA/2J both 24.245 0.251001422 24.737811969 23.752188031
NOD.CB17-Prkdcscid/J both 26.3075 0.3074127043 26.9110689316 25.7039310684
NOD/ShiLtJ both 26.4269230769 0.1885190397 26.7970581877 26.0567879661




  GWAS USING LINEAR MIXED MODELS