Project measure / variable:   Jaxpheno4   MCH16

ID, description, units MPD:22983   MCH16   mean RBC corpuscular hemoglobin content (MCH)   [pg]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - mean RBC corpuscular hemoglobin content (MCH) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means15.6   pg 15.4   pg
Median of the strain means15.5   pg 15.2   pg
SD of the strain means± 0.865 ± 0.754
Coefficient of variation (CV)0.0554 0.0491
Min–max range of strain means14.2   –   17.1   pg 14.0   –   16.4   pg
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.0915 2.0915 9.125 0.0027
strain 8 157.3089 19.6636 85.7898 < 0.0001
sex:strain 8 5.7632 0.7204 3.143 0.002
Residuals 286 65.5532 0.2292


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 15.1 0.329   16 0.0821 0.0218 14.3, 15.5 -0.59
B6D2F1/J m 15.0 0.313   10 0.0989 0.0208 14.7, 15.7 -0.47
BALB/cByJ f 16.2 0.253   21 0.0553 0.0156 15.8, 16.9 0.68
BALB/cByJ m 15.9 0.195   22 0.0416 0.0123 15.6, 16.1 0.72
C3H/HeJ f 16.5 0.155   10 0.049 0.0094 16.3, 16.7 1.03
C3H/HeJ m 16.3 0.162   11 0.0488 0.00991 16.0, 16.6 1.25
C57BL/6J f 15.1 0.283   35 0.0478 0.0188 14.8, 15.9 -0.59
C57BL/6J m 15.2 0.718   30 0.131 0.0474 14.7, 18.4 -0.21
CBA/J f 15.3 0.4   22 0.0852 0.026 14.2, 16.1 -0.36
CBA/J m 15.4 0.129   23 0.0269 0.00838 15.2, 15.7 0.06
DBA/2J f 14.2 0.258   11 0.0778 0.0182 13.5, 14.4 -1.63
DBA/2J m 14.0 0.207   11 0.0625 0.0148 13.6, 14.4 -1.8
FVB/NJ f 15.5 0.416   10 0.132 0.0269 15.2, 16.6 -0.13
FVB/NJ m 15.1 0.145   11 0.0436 0.00957 14.9, 15.4 -0.34
NOD.CB17-Prkdcscid/J f 15.5 0.238   10 0.0752 0.0154 15.2, 16.1 -0.13
NOD.CB17-Prkdcscid/J m 14.9 0.951   10 0.301 0.0636 12.3, 15.5 -0.6
NOD/ShiLtJ f 17.1 0.982   20 0.22 0.0573 16.5, 21.1 1.72
NOD/ShiLtJ m 16.4 0.681   21 0.149 0.0415 13.8, 17.3 1.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 15.0562 0.1197 15.2918 14.8207
B6D2F1/J m 15.0 0.1514 15.298 14.702
BALB/cByJ f 16.2286 0.1045 16.4342 16.0229
BALB/cByJ m 15.8909 0.1021 16.0918 15.69
C3H/HeJ f 16.48 0.1514 16.778 16.182
C3H/HeJ m 16.3273 0.1444 16.6114 16.0431
C57BL/6J f 15.0857 0.0809 15.245 14.9264
C57BL/6J m 15.1533 0.0874 15.3254 14.9813
CBA/J f 15.35 0.1021 15.5509 15.1491
CBA/J m 15.387 0.0998 15.5834 15.1905
DBA/2J f 14.1636 0.1444 14.4478 13.8795
DBA/2J m 14.0091 0.1444 14.2932 13.725
FVB/NJ f 15.47 0.1514 15.768 15.172
FVB/NJ m 15.1091 0.1444 15.3932 14.825
NOD.CB17-Prkdcscid/J f 15.49 0.1514 15.788 15.192
NOD.CB17-Prkdcscid/J m 14.95 0.1514 15.248 14.652
NOD/ShiLtJ f 17.12 0.1071 17.3307 16.9093
NOD/ShiLtJ m 16.3857 0.1045 16.5913 16.1801


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 15.0281 0.0965 15.2181 14.8382
BALB/cByJ both 16.0597 0.073 16.2035 15.916
C3H/HeJ both 16.4036 0.1046 16.6095 16.1978
C57BL/6J both 15.1195 0.0596 15.2368 15.0023
CBA/J both 15.3685 0.0714 15.509 15.228
DBA/2J both 14.0864 0.1021 14.2873 13.8855
FVB/NJ both 15.2895 0.1046 15.4954 15.0837
NOD.CB17-Prkdcscid/J both 15.22 0.1071 15.4307 15.0093
NOD/ShiLtJ both 16.7529 0.0748 16.9001 16.6056




  GWAS USING LINEAR MIXED MODELS