Project measure / variable:   Jaxpheno3   Ca16

ID, description, units MPD:22851   Ca16   calcium (plasma Ca)   [mg/dL]  at age 16wks  
Data set, strains Jaxpheno3   inbred   8 strains     sex: both     age: 16wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Jaxpheno3 - calcium (plasma Ca) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means10.1   mg/dL 10.2   mg/dL
Median of the strain means10.2   mg/dL 10.2   mg/dL
SD of the strain means± 0.294 ± 0.357
Coefficient of variation (CV)0.0291 0.0350
Min–max range of strain means9.52   –   10.4   mg/dL 9.81   –   10.9   mg/dL
Mean sample size per strain16.1   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.0779 4.0779 23.3024 < 0.0001
strain 7 25.2458 3.6065 20.6086 < 0.0001
sex:strain 7 10.066 1.438 8.217 < 0.0001
Residuals 244 42.7003 0.175


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 10.2 0.321   10 0.101 0.0313 9.7, 10.8 0.39
B6D2F1/J m 9.91 0.57   10 0.18 0.0576 9.1, 11.1 -0.85
BALB/cByJ f 9.77 0.211   20 0.0471 0.0215 9.4, 10.1 -1.08
BALB/cByJ m 9.81 0.211   20 0.0472 0.0215 9.3, 10.2 -1.13
C3H/HeJ f 10.1 0.236   10 0.0746 0.0233 9.9, 10.6 0.05
C3H/HeJ m 10.0 0.189   10 0.0596 0.0189 9.7, 10.2 -0.6
C57BL/6J f 10.4 0.333   30 0.0608 0.0319 9.4, 10.9 1.07
C57BL/6J m 10.9 0.491   30 0.0897 0.0451 9.9, 12.1 1.92
CBA/J f 10.3 0.2   10 0.0633 0.0195 9.9, 10.6 0.73
CBA/J m 10.0 0.434   20 0.0971 0.0433 9.4, 11.0 -0.6
DBA/2J f 10.2 0.275   10 0.087 0.0269 9.7, 10.6 0.39
DBA/2J m 10.4 0.175   10 0.0554 0.0169 10.2, 10.7 0.52
NOD.CB17-Prkdcscid/J f 10.2 0.152   10 0.0482 0.015 10.0, 10.5 0.39
NOD.CB17-Prkdcscid/J m 10.3 0.345   10 0.109 0.0334 9.7, 10.7 0.24
NOD/ShiLtJ f 9.52 0.733   29 0.136 0.077 7.6, 10.7 -1.93
NOD/ShiLtJ m 10.4 0.494   21 0.108 0.0475 9.6, 11.7 0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 10.25 0.1323 10.5106 9.9894
B6D2F1/J m 9.91 0.1323 10.1706 9.6494
BALB/cByJ f 9.77 0.0935 9.9543 9.5857
BALB/cByJ m 9.815 0.0935 9.9993 9.6307
C3H/HeJ f 10.13 0.1323 10.3906 9.8694
C3H/HeJ m 10.0 0.1323 10.2606 9.7394
C57BL/6J f 10.4433 0.0764 10.5938 10.2929
C57BL/6J m 10.9 0.0764 11.0504 10.7496
CBA/J f 10.27 0.1323 10.5306 10.0094
CBA/J m 10.035 0.0935 10.2193 9.8507
DBA/2J f 10.23 0.1323 10.4906 9.9694
DBA/2J m 10.38 0.1323 10.6406 10.1194
NOD.CB17-Prkdcscid/J f 10.19 0.1323 10.4506 9.9294
NOD.CB17-Prkdcscid/J m 10.31 0.1323 10.5706 10.0494
NOD/ShiLtJ f 9.5241 0.0777 9.6772 9.3711
NOD/ShiLtJ m 10.4048 0.0913 10.5846 10.2249


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 10.08 0.0935 10.2643 9.8957
BALB/cByJ both 9.7925 0.0661 9.9228 9.6622
C3H/HeJ both 10.065 0.0935 10.2493 9.8807
C57BL/6J both 10.6717 0.054 10.778 10.5653
CBA/J both 10.1525 0.081 10.3121 9.9929
DBA/2J both 10.305 0.0935 10.4893 10.1207
NOD.CB17-Prkdcscid/J both 10.25 0.0935 10.4343 10.0657
NOD/ShiLtJ both 9.9644 0.0599 10.0825 9.8464




  GWAS USING LINEAR MIXED MODELS