Project measure / variable:   Jaxpheno3   FFA16

ID, description, units MPD:22846   FFA16   free fatty acids (plasma FFA)   [mEq/L]  at age 16wks  
Data set, strains Jaxpheno3   inbred   8 strains     sex: both     age: 16wks
Procedure lipid profile
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  STRAIN COMPARISON PLOT
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Jaxpheno3 - free fatty acids (plasma FFA) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means2.28   mEq/L 2.29   mEq/L
Median of the strain means2.40   mEq/L 2.34   mEq/L
SD of the strain means± 0.628 ± 0.469
Coefficient of variation (CV)0.276 0.205
Min–max range of strain means1.31   –   3.26   mEq/L 1.60   –   2.89   mEq/L
Mean sample size per strain16.2   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2716 0.2716 0.5904 0.443
strain 7 71.5243 10.2178 22.212 < 0.0001
sex:strain 7 6.0839 0.8691 1.8893 0.0718
Residuals 245 112.7028 0.46


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 2.2 0.404   10 0.128 0.183 1.62, 2.98 -0.13
B6D2F1/J m 2.15 0.613   10 0.194 0.286 1.41, 3.07 -0.3
BALB/cByJ f 2.59 0.283   20 0.0632 0.109 2.02, 3.01 0.49
BALB/cByJ m 2.73 0.36   20 0.0805 0.132 2.09, 3.22 0.93
C3H/HeJ f 1.9 0.191   10 0.0605 0.101 1.56, 2.15 -0.6
C3H/HeJ m 1.99 0.151   10 0.0478 0.0758 1.61, 2.16 -0.64
C57BL/6J f 1.69 0.416   30 0.076 0.247 1.07, 2.81 -0.94
C57BL/6J m 1.81 0.414   30 0.0756 0.229 1.12, 2.95 -1.03
CBA/J f 2.65 0.264   10 0.0835 0.0998 1.9, 2.75 0.59
CBA/J m 2.53 0.192   20 0.0429 0.076 2.18, 2.91 0.51
DBA/2J f 2.64 0.448   10 0.142 0.17 1.89, 3.29 0.57
DBA/2J m 2.89 0.264   10 0.0835 0.0913 2.47, 3.28 1.28
NOD.CB17-Prkdcscid/J f 1.31 0.144   10 0.0454 0.109 1.07, 1.55 -1.54
NOD.CB17-Prkdcscid/J m 1.6 0.264   10 0.0834 0.165 1.31, 2.11 -1.47
NOD/ShiLtJ f 3.26 1.31   30 0.239 0.401 1.17, 5.88 1.56
NOD/ShiLtJ m 2.63 1.4   21 0.306 0.533 1.28, 4.92 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 2.201 0.2145 2.6235 1.7785
B6D2F1/J m 2.145 0.2145 2.5675 1.7225
BALB/cByJ f 2.591 0.1517 2.8897 2.2923
BALB/cByJ m 2.7345 0.1517 3.0332 2.4358
C3H/HeJ f 1.898 0.2145 2.3205 1.4755
C3H/HeJ m 1.994 0.2145 2.4165 1.5715
C57BL/6J f 1.6857 0.1238 1.9296 1.4418
C57BL/6J m 1.8067 0.1238 2.0506 1.5628
CBA/J f 2.645 0.2145 3.0675 2.2225
CBA/J m 2.527 0.1517 2.8257 2.2283
DBA/2J f 2.637 0.2145 3.0595 2.2145
DBA/2J m 2.89 0.2145 3.3125 2.4675
NOD.CB17-Prkdcscid/J f 1.315 0.2145 1.7375 0.8925
NOD.CB17-Prkdcscid/J m 1.602 0.2145 2.0245 1.1795
NOD/ShiLtJ f 3.2563 0.1238 3.5002 3.0124
NOD/ShiLtJ m 2.629 0.148 2.9206 2.3375


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 2.173 0.1517 2.4717 1.8743
BALB/cByJ both 2.6627 0.1072 2.874 2.4515
C3H/HeJ both 1.946 0.1517 2.2447 1.6473
C57BL/6J both 1.7462 0.0876 1.9186 1.5737
CBA/J both 2.586 0.1313 2.8447 2.3273
DBA/2J both 2.7635 0.1517 3.0622 2.4648
NOD.CB17-Prkdcscid/J both 1.4585 0.1517 1.7572 1.1598
NOD/ShiLtJ both 2.9427 0.0965 3.1327 2.7526




  GWAS USING LINEAR MIXED MODELS