Project measure / variable:   Lake3   tot_activity

ID, description, units MPD:19012   tot_activity   total locomotor activity, line crosses plus rearings, 5 min test   [n]  
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Lake3 - total locomotor activity, line crosses plus rearings, 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means128   n 130   n
Median of the strain means126   n 134   n
SD of the strain means± 40.7 ± 36.2
Coefficient of variation (CV)0.318 0.278
Min–max range of strain means8.25   –   187   n 5.25   –   193   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4402.7374 4402.7374 2.8177 0.0942
strain 22 534814.2445 24309.7384 15.5579 < 0.0001
sex:strain 22 92205.6738 4191.167 2.6823 0.0001
Residuals 336 525010.7161 1562.5319


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 8.25 15.8   16 3.96 1.92 -2.94
A/J m 5.25 9.51   8 3.36 1.81 -3.45
B6.A-Chr1 f 103.0 25.2   8 8.92 0.244 59.0, 138.0 -0.61
B6.A-Chr1 m 110.0 45.7   8 16.1 0.417 55.0, 174.0 -0.56
B6.A-Chr10 f 96.8 45.1   8 16.0 0.466 -0.76
B6.A-Chr10 m 89.6 51.2   8 18.1 0.571 -1.12
B6.A-Chr11 f 174.0 39.9   8 14.1 0.229 119.0, 253.0 1.14
B6.A-Chr11 m 136.0 36.0   10 11.4 0.265 84.0, 183.0 0.16
B6.A-Chr12 f 119.0 46.2   8 16.3 0.389 67.0, 217.0 -0.22
B6.A-Chr12 m 134.0 38.5   8 13.6 0.287 87.0, 194.0 0.1
B6.A-Chr13 f 86.4 56.5   5 25.3 0.654 7.0, 157.0 -1.02
B6.A-Chr13 m 169.0 38.5   7 14.6 0.228 116.0, 210.0 1.07
B6.A-Chr14 f 126.0 17.1   8 6.05 0.135 91.0, 145.0 -0.04
B6.A-Chr14 m 150.0 68.5   8 24.2 0.457 0.55
B6.A-Chr15 f 112.0 26.5   8 9.36 0.237 73.0, 144.0 -0.39
B6.A-Chr15 m 120.0 30.4   8 10.7 0.253 88.0, 185.0 -0.28
B6.A-Chr16 f 159.0 34.0   8 12.0 0.214 93.0, 214.0 0.77
B6.A-Chr16 m 118.0 24.5   8 8.65 0.207 91.0, 163.0 -0.34
B6.A-Chr17 f 136.0 34.2   8 12.1 0.252 74.0, 171.0 0.2
B6.A-Chr17 m 150.0 40.7   8 14.4 0.272 89.0, 201.0 0.55
B6.A-Chr18 f 121.0 64.2   8 22.7 0.53 32.0, 206.0 -0.17
B6.A-Chr18 m 119.0 33.3   8 11.8 0.28 79.0, 177.0 -0.31
B6.A-Chr19 f 149.0 33.9   8 12.0 0.228 88.0, 186.0 0.52
B6.A-Chr19 m 147.0 42.2   8 14.9 0.286 108.0, 216.0 0.46
B6.A-Chr2 f 174.0 61.5   8 21.7 0.352 103.0, 272.0 1.14
B6.A-Chr2 m 193.0 34.1   8 12.0 0.176 151.0, 242.0 1.73
B6.A-Chr3 f 128.0 22.8   8 8.05 0.178 87.0, 145.0 0.0
B6.A-Chr3 m 133.0 34.1   8 12.0 0.256 86.0, 181.0 0.08
B6.A-Chr4 f 101.0 21.4   8 7.56 0.212 79.0, 143.0 -0.66
B6.A-Chr4 m 145.0 42.0   8 14.9 0.291 59.0, 180.0 0.41
B6.A-Chr5 f 184.0 25.8   8 9.13 0.14 139.0, 221.0 1.38
B6.A-Chr5 m 108.0 36.2   8 12.8 0.336 61.0, 151.0 -0.61
B6.A-Chr6 f 85.9 39.7   8 14.0 0.462 4.0, 129.0 -1.03
B6.A-Chr6 m 109.0 61.0   8 21.6 0.561 5.0, 192.0 -0.59
B6.A-Chr7 f 163.0 50.1   8 17.7 0.308 83.0, 222.0 0.87
B6.A-Chr7 m 114.0 51.3   8 18.2 0.451 -0.45
B6.A-Chr8 f 100.0 37.2   8 13.1 0.37 49.0, 144.0 -0.68
B6.A-Chr8 m 125.0 28.6   8 10.1 0.229 85.0, 179.0 -0.14
B6.A-Chr9 f 150.0 36.5   8 12.9 0.244 97.0, 200.0 0.55
B6.A-Chr9 m 152.0 41.5   8 14.7 0.272 94.0, 215.0 0.6
B6.A-ChrX f 187.0 18.8   8 6.64 0.1 154.0, 209.0 1.46
B6.A-ChrX m 169.0 37.8   8 13.4 0.223 120.0, 220.0 1.07
B6.A-ChrY f 158.0 44.5   8 15.7 0.281 96.0, 221.0 0.74
B6.A-ChrY m 146.0 46.9   8 16.6 0.321 67.0, 207.0 0.44
C57BL/6J f 118.0 44.6   16 11.1 0.377 26.0, 183.0 -0.24
C57BL/6J m 153.0 30.7   8 10.8 0.2 109.0, 197.0 0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 8.25 9.8822 27.6888 0.0
A/J m 5.25 13.9756 32.7406 0.0
B6.A-Chr1 f 103.375 13.9756 130.8656 75.8844
B6.A-Chr1 m 109.5 13.9756 136.9906 82.0094
B6.A-Chr10 f 96.75 13.9756 124.2406 69.2594
B6.A-Chr10 m 89.625 13.9756 117.1156 62.1344
B6.A-Chr11 f 174.375 13.9756 201.8656 146.8844
B6.A-Chr11 m 135.6 12.5001 160.1884 111.0116
B6.A-Chr12 f 118.875 13.9756 146.3656 91.3844
B6.A-Chr12 m 134.25 13.9756 161.7406 106.7594
B6.A-Chr13 f 86.4 17.6778 121.1732 51.6268
B6.A-Chr13 m 168.7143 14.9405 198.103 139.3256
B6.A-Chr14 f 126.5 13.9756 153.9906 99.0094
B6.A-Chr14 m 149.75 13.9756 177.2406 122.2594
B6.A-Chr15 f 111.75 13.9756 139.2406 84.2594
B6.A-Chr15 m 120.125 13.9756 147.6156 92.6344
B6.A-Chr16 f 158.875 13.9756 186.3656 131.3844
B6.A-Chr16 m 118.125 13.9756 145.6156 90.6344
B6.A-Chr17 f 135.875 13.9756 163.3656 108.3844
B6.A-Chr17 m 149.75 13.9756 177.2406 122.2594
B6.A-Chr18 f 121.0 13.9756 148.4906 93.5094
B6.A-Chr18 m 118.625 13.9756 146.1156 91.1344
B6.A-Chr19 f 148.75 13.9756 176.2406 121.2594
B6.A-Chr19 m 147.375 13.9756 174.8656 119.8844
B6.A-Chr2 f 174.5 13.9756 201.9906 147.0094
B6.A-Chr2 m 193.375 13.9756 220.8656 165.8844
B6.A-Chr3 f 127.875 13.9756 155.3656 100.3844
B6.A-Chr3 m 133.0 13.9756 160.4906 105.5094
B6.A-Chr4 f 100.625 13.9756 128.1156 73.1344
B6.A-Chr4 m 144.625 13.9756 172.1156 117.1344
B6.A-Chr5 f 183.875 13.9756 211.3656 156.3844
B6.A-Chr5 m 107.75 13.9756 135.2406 80.2594
B6.A-Chr6 f 85.875 13.9756 113.3656 58.3844
B6.A-Chr6 m 108.75 13.9756 136.2406 81.2594
B6.A-Chr7 f 162.75 13.9756 190.2406 135.2594
B6.A-Chr7 m 113.875 13.9756 141.3656 86.3844
B6.A-Chr8 f 100.5 13.9756 127.9906 73.0094
B6.A-Chr8 m 124.875 13.9756 152.3656 97.3844
B6.A-Chr9 f 149.875 13.9756 177.3656 122.3844
B6.A-Chr9 m 152.375 13.9756 179.8656 124.8844
B6.A-ChrX f 187.25 13.9756 214.7406 159.7594
B6.A-ChrX m 169.25 13.9756 196.7406 141.7594
B6.A-ChrY f 158.125 13.9756 185.6156 130.6344
B6.A-ChrY m 146.375 13.9756 173.8656 118.8844
C57BL/6J f 118.3125 9.8822 137.7513 98.8737
C57BL/6J m 153.0 13.9756 180.4906 125.5094


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 6.75 8.5583 23.5845 0.0
B6.A-Chr1 both 106.4375 9.8822 125.8763 86.9987
B6.A-Chr10 both 93.1875 9.8822 112.6263 73.7487
B6.A-Chr11 both 154.9875 9.3751 173.4288 136.5462
B6.A-Chr12 both 126.5625 9.8822 146.0013 107.1237
B6.A-Chr13 both 127.5571 11.5729 150.3215 104.7927
B6.A-Chr14 both 138.125 9.8822 157.5638 118.6862
B6.A-Chr15 both 115.9375 9.8822 135.3763 96.4987
B6.A-Chr16 both 138.5 9.8822 157.9388 119.0612
B6.A-Chr17 both 142.8125 9.8822 162.2513 123.3737
B6.A-Chr18 both 119.8125 9.8822 139.2513 100.3737
B6.A-Chr19 both 148.0625 9.8822 167.5013 128.6237
B6.A-Chr2 both 183.9375 9.8822 203.3763 164.4987
B6.A-Chr3 both 130.4375 9.8822 149.8763 110.9987
B6.A-Chr4 both 122.625 9.8822 142.0638 103.1862
B6.A-Chr5 both 145.8125 9.8822 165.2513 126.3737
B6.A-Chr6 both 97.3125 9.8822 116.7513 77.8737
B6.A-Chr7 both 138.3125 9.8822 157.7513 118.8737
B6.A-Chr8 both 112.6875 9.8822 132.1263 93.2487
B6.A-Chr9 both 151.125 9.8822 170.5638 131.6862
B6.A-ChrX both 178.25 9.8822 197.6888 158.8112
B6.A-ChrY both 152.25 9.8822 171.6888 132.8112
C57BL/6J both 135.6562 8.5583 152.4908 118.8217




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA