Project measure / variable:   Jaxwest1   lean_wt

ID, description, units MPD:15128   lean_wt   lean weight, head excluded   [g]  
Data set, strains Jaxwest1   inbred   7 strains     sex: both     age: 11-13wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxwest1 - lean weight, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means17.9   g 23.2   g
Median of the strain means17.6   g 23.5   g
SD of the strain means± 2.16 ± 2.57
Coefficient of variation (CV)0.121 0.111
Min–max range of strain means15.8   –   21.3   g 20.0   –   27.3   g
Mean sample size per strain8.0   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 784.1972 784.1972 341.6493 < 0.0001
strain 6 468.2992 78.0499 34.0038 < 0.0001
sex:strain 6 72.2959 12.0493 5.2495 0.0001
Residuals 97 222.6468 2.2953


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.8 0.548   8 0.194 0.0347 15.0, 16.5 -0.97
129S1/SvImJ m 20.0 1.96   8 0.693 0.0979 16.2, 21.9 -1.24
A/J f 16.0 1.85   8 0.654 0.116 13.2, 18.2 -0.88
A/J m 20.3 1.0   8 0.353 0.0492 19.3, 22.2 -1.13
BALB/cJ f 18.4 0.974   8 0.344 0.0529 17.5, 20.4 0.23
BALB/cJ m 24.9 1.78   8 0.631 0.0716 22.8, 27.7 0.66
C57BL/6J f 17.6 1.49   8 0.527 0.0846 15.0, 19.5 -0.14
C57BL/6J m 24.0 2.12   8 0.749 0.0883 22.1, 27.9 0.31
DBA/2J f 21.3 2.04   8 0.722 0.096 18.8, 24.5 1.57
DBA/2J m 23.5 1.74   7 0.659 0.0741 22.1, 27.2 0.12
NOD/ShiLtJ f 20.1 1.34   8 0.475 0.0669 18.6, 22.7 1.02
NOD/ShiLtJ m 27.3 1.52   8 0.538 0.0557 25.4, 29.8 1.59
SJL/J f 16.1 0.843   8 0.298 0.0524 15.3, 17.8 -0.83
SJL/J m 22.4 0.891   8 0.315 0.0398 20.9, 23.6 -0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.7625 0.5356 16.8256 14.6994
129S1/SvImJ m 20.0125 0.5356 21.0756 18.9494
A/J f 16.0 0.5356 17.0631 14.9369
A/J m 20.325 0.5356 21.3881 19.2619
BALB/cJ f 18.4 0.5356 19.4631 17.3369
BALB/cJ m 24.9125 0.5356 25.9756 23.8494
C57BL/6J f 17.6375 0.5356 18.7006 16.5744
C57BL/6J m 23.9875 0.5356 25.0506 22.9244
DBA/2J f 21.275 0.5356 22.3381 20.2119
DBA/2J m 23.5286 0.5726 24.6651 22.3921
NOD/ShiLtJ f 20.075 0.5356 21.1381 19.0119
NOD/ShiLtJ m 27.3125 0.5356 28.3756 26.2494
SJL/J f 16.075 0.5356 17.1381 15.0119
SJL/J m 22.4 0.5356 23.4631 21.3369


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 17.8875 0.3788 18.6392 17.1358
A/J both 18.1625 0.3788 18.9142 17.4108
BALB/cJ both 21.6563 0.3788 22.408 20.9045
C57BL/6J both 20.8125 0.3788 21.5642 20.0608
DBA/2J both 22.4018 0.3921 23.1799 21.6237
NOD/ShiLtJ both 23.6938 0.3788 24.4455 22.942
SJL/J both 19.2375 0.3788 19.9892 18.4858




  GWAS USING LINEAR MIXED MODELS