Project measure / variable:   Naggert1   tissuemass_fat8

ID, description, units MPD:14316   tissuemass_fat8   total tissue mass, head excluded   [g]  
high-fat diet study
Data set, strains Naggert1   inbred w/CC7   41 strains     sex: both     age: 15-17wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Naggert1 - total tissue mass, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains38 strains
Mean of the strain means21.7   g 27.6   g
Median of the strain means21.5   g 28.1   g
SD of the strain means± 5.62 ± 6.88
Coefficient of variation (CV)0.259 0.249
Min–max range of strain means11.3   –   35.5   g 14.6   –   41.5   g
Mean sample size per strain9.8   mice 9.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4630.6627 4630.6627 735.9113 < 0.0001
strain 35 27176.1946 776.4627 123.3965 < 0.0001
sex:strain 35 1558.3527 44.5244 7.0759 < 0.0001
Residuals 639 4020.856 6.2924


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 20.8 0.943   8 0.333 0.0452 19.7, 22.7 -0.16
129S1/SvImJ m 30.1 3.13   10 0.99 0.104 25.4, 35.0 0.36
A/J f 20.4 0.874   10 0.276 0.0428 18.7, 21.3 -0.24
A/J m 23.6 2.32   10 0.734 0.0985 19.6, 26.4 -0.58
AKR/J f 35.5 4.58   18 1.08 0.129 23.3, 40.5 2.45
AKR/J m 41.5 5.39   17 1.31 0.13 29.3, 51.1 2.02
BALB/cByJ m 28.1 4.08   9 1.36 0.145 18.3, 31.2 0.07
BALB/cJ f 23.6 1.56   9 0.519 0.0659 21.3, 26.5 0.33
BALB/cJ m 28.3 0.87   10 0.275 0.0308 26.7, 29.3 0.1
BTBR T+ Itpr3tf/J f 30.8 1.84   10 0.581 0.0598 28.1, 32.9 1.61
BTBR T+ Itpr3tf/J m 39.3 2.35   10 0.744 0.0598 35.7, 43.1 1.7
BUB/BnJ f 26.6 2.13   12 0.616 0.0803 23.6, 31.1 0.87
BUB/BnJ m 31.6 1.21   8 0.429 0.0385 29.9, 33.1 0.58
C3H/HeJ f 22.1 3.0   10 0.95 0.136 18.0, 25.6 0.07
C3H/HeJ m 31.4 3.2   10 1.01 0.102 27.3, 38.2 0.55
C57BL/10J f 20.6 1.74   9 0.58 0.0844 19.3, 24.8 -0.2
C57BL/10J m 28.9 1.7   12 0.49 0.0588 26.5, 31.8 0.19
C57BL/6J f 19.9 1.18   10 0.373 0.0594 18.0, 22.1 -0.32
C57BL/6J m 23.9 1.38   10 0.437 0.0579 21.9, 26.0 -0.54
C57BLKS/J f 21.3 1.01   12 0.292 0.0475 19.4, 22.3 -0.08
C57BLKS/J m 25.6 1.99   10 0.63 0.078 22.8, 28.9 -0.29
C57BR/cdJ f 21.5 2.04   12 0.59 0.0951 17.5, 24.5 -0.04
C57BR/cdJ m 31.4 3.41   10 1.08 0.109 24.8, 35.7 0.55
C57L/J f 19.7 1.23   10 0.389 0.0623 17.9, 21.9 -0.36
C57L/J m 28.2 2.65   10 0.839 0.0942 23.8, 31.9 0.09
C58/J f 22.2 2.22   11 0.67 0.1 18.4, 26.0 0.08
C58/J m 24.7 1.35   9 0.45 0.0546 23.1, 27.0 -0.42
CAST/EiJ f 14.0 0.747   9 0.249 0.0533 12.5, 14.9 -1.37
CAST/EiJ m 17.3 1.04   8 0.369 0.0604 15.8, 18.4 -1.49
CBA/J f 28.5 2.17   10 0.687 0.0763 25.1, 31.9 1.21
CBA/J m 37.3 3.02   8 1.07 0.081 32.7, 40.7 1.41
CZECHII/EiJ f 12.4 1.22   16 0.306 0.0984 10.4, 15.3 -1.66
CZECHII/EiJ m 14.7 1.26   11 0.38 0.0859 12.5, 16.9 -1.87
DBA/1J f 21.9 1.84   12 0.53 0.084 18.4, 25.3 0.03
DBA/1J m 27.0 4.46   8 1.58 0.165 21.5, 35.2 -0.09
DBA/2J f 25.8 1.99   9 0.663 0.0771 22.5, 28.2 0.73
DBA/2J m 33.4 3.54   9 1.18 0.106 26.8, 39.8 0.84
FVB/NJ f 22.5 2.52   9 0.84 0.112 19.1, 25.9 0.14
FVB/NJ m 29.7 1.96   10 0.62 0.0659 26.6, 33.2 0.31
I/LnJ f 21.0 1.5   9 0.5 0.0715 18.6, 22.5 -0.13
I/LnJ m 25.0 2.35   12 0.677 0.094 21.8, 29.0 -0.38
JF1/MsJ f 20.2 2.28   10 0.722 0.113 16.3, 24.1 -0.27
JF1/MsJ m 25.2 3.49   7 1.32 0.139 19.9, 30.6 -0.35
KK/HlJ f 27.8 6.38   8 2.25 0.23 23.3, 42.1 1.08
KK/HlJ m 39.4 2.15   9 0.716 0.0546 35.1, 42.0 1.72
LP/J f 23.8 1.9   9 0.633 0.0797 22.1, 27.7 0.37
LP/J m 33.1 3.24   9 1.08 0.0979 28.0, 37.6 0.8
MA/MyJ f 22.0 1.28   9 0.426 0.058 20.2, 23.9 0.05
MA/MyJ m 26.4 3.57   10 1.13 0.135 22.3, 33.8 -0.17
MOLF/EiJ f 13.0 1.2   7 0.452 0.0921 11.1, 14.2 -1.55
MOLF/EiJ m 15.7 1.23   7 0.463 0.0779 14.3, 17.6 -1.73
MSM/MsJ f 12.0 1.13   8 0.401 0.0944 10.0, 13.3 -1.73
MSM/MsJ m 15.7 2.0   12 0.578 0.127 11.9, 18.2 -1.73
NOD/ShiLtJ f 25.3 2.79   15 0.721 0.11 19.1, 30.9 0.64
NOD/ShiLtJ m 28.7 2.69   8 0.95 0.0936 23.9, 31.6 0.16
NON/ShiLtJ f 32.1 2.22   10 0.701 0.0691 28.8, 34.7 1.85
NON/ShiLtJ m 30.7 1.96   10 0.62 0.0638 27.7, 33.8 0.45
NZB/BlNJ m 34.6 3.51   10 1.11 0.101 29.1, 40.0 1.02
NZW/LacJ f 29.9 1.92   10 0.608 0.0643 27.3, 33.4 1.45
NZW/LacJ m 36.2 3.79   10 1.2 0.105 29.1, 42.1 1.25
PERA/EiJ f 24.2 1.72   9 0.572 0.0708 21.3, 27.1 0.44
PERA/EiJ m 26.9 0.749   9 0.25 0.0278 25.7, 28.0 -0.1
PL/J f 11.3 4.12   10 1.3 0.364 7.73, 19.4 -1.85
PWK/PhJ f 17.9 1.89   7 0.714 0.106 13.9, 19.4 -0.68
RIIIS/J f 18.3 1.11   9 0.369 0.0605 16.8, 19.9 -0.61
SEA/GnJ f 26.6 1.89   9 0.63 0.0711 25.2, 31.4 0.87
SEA/GnJ m 28.3 1.9   10 0.602 0.0673 24.3, 31.6 0.1
SJL/J f 21.0 1.71   9 0.569 0.0812 18.1, 24.4 -0.13
SJL/J m 26.0 1.78   15 0.46 0.0685 22.1, 29.8 -0.23
SM/J f 17.3 2.45   9 0.816 0.141 12.0, 20.0 -0.79
SM/J m 24.9 2.41   9 0.804 0.0969 21.3, 29.1 -0.39
SPRET/EiJ f 19.0 5.11   4 2.55 0.268 13.9, 26.1 -0.48
SPRET/EiJ m 16.0 3.54   6 1.45 0.222 13.4, 23.0 -1.68
SWR/J f 21.9 1.21   10 0.383 0.0553 19.5, 23.5 0.03
SWR/J m 25.0 2.91   10 0.92 0.116 17.4, 27.4 -0.38
WSB/EiJ f 12.5 0.978   8 0.346 0.0781 11.3, 13.8 -1.64
WSB/EiJ m 14.6 1.25   9 0.416 0.0856 13.0, 16.9 -1.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 20.8375 0.8869 22.579 19.096
129S1/SvImJ m 30.1 0.7932 31.6577 28.5423
A/J f 20.41 0.7932 21.9677 18.8523
A/J m 23.58 0.7932 25.1377 22.0223
AKR/J f 35.4611 0.5913 36.6221 34.3001
AKR/J m 41.5412 0.6084 42.7359 40.3465
BALB/cJ f 23.6444 0.8362 25.2864 22.0025
BALB/cJ m 28.28 0.7932 29.8377 26.7223
BTBR T+ Itpr3tf/J f 30.77 0.7932 32.3277 29.2123
BTBR T+ Itpr3tf/J m 39.33 0.7932 40.8877 37.7723
BUB/BnJ f 26.5667 0.7241 27.9886 25.1447
BUB/BnJ m 31.5625 0.8869 33.304 29.821
C3H/HeJ f 22.05 0.7932 23.6077 20.4923
C3H/HeJ m 31.45 0.7932 33.0077 29.8923
C57BL/10J f 20.6444 0.8362 22.2864 19.0025
C57BL/10J m 28.8667 0.7241 30.2886 27.4447
C57BL/6J f 19.87 0.7932 21.4277 18.3123
C57BL/6J m 23.86 0.7932 25.4177 22.3023
C57BLKS/J f 21.2667 0.7241 22.6886 19.8447
C57BLKS/J m 25.55 0.7932 27.1077 23.9923
C57BR/cdJ f 21.4833 0.7241 22.9053 20.0614
C57BR/cdJ m 31.36 0.7932 32.9177 29.8023
C57L/J f 19.73 0.7932 21.2877 18.1723
C57L/J m 28.17 0.7932 29.7277 26.6123
C58/J f 22.2091 0.7563 23.6943 20.7239
C58/J m 24.7222 0.8362 26.3642 23.0803
CAST/EiJ f 14.0 0.8362 15.6419 12.3581
CAST/EiJ m 17.275 0.8869 19.0165 15.5335
CBA/J f 28.48 0.7932 30.0377 26.9223
CBA/J m 37.3375 0.8869 39.079 35.596
CZECHII/EiJ f 12.4375 0.6271 13.669 11.206
CZECHII/EiJ m 14.6636 0.7563 16.1488 13.1784
DBA/1J f 21.8667 0.7241 23.2886 20.4447
DBA/1J m 26.975 0.8869 28.7165 25.2335
DBA/2J f 25.8 0.8362 27.4419 24.1581
DBA/2J m 33.3778 0.8362 35.0197 31.7358
FVB/NJ f 22.4556 0.8362 24.0975 20.8136
FVB/NJ m 29.74 0.7932 31.2977 28.1823
I/LnJ f 20.9667 0.8362 22.6086 19.3247
I/LnJ m 24.975 0.7241 26.397 23.553
JF1/MsJ f 20.18 0.7932 21.7377 18.6223
JF1/MsJ m 25.1571 0.9481 27.0189 23.2954
KK/HlJ f 27.75 0.8869 29.4915 26.0085
KK/HlJ m 39.3556 0.8362 40.9975 37.7136
LP/J f 23.8333 0.8362 25.4753 22.1914
LP/J m 33.1 0.8362 34.7419 31.4581
MA/MyJ f 22.0111 0.8362 23.6531 20.3692
MA/MyJ m 26.43 0.7932 27.9877 24.8723
MOLF/EiJ f 12.9857 0.9481 14.8475 11.1239
MOLF/EiJ m 15.7286 0.9481 17.5904 13.8668
MSM/MsJ f 12.025 0.8869 13.7665 10.2835
MSM/MsJ m 15.725 0.7241 17.147 14.303
NOD/ShiLtJ f 25.34 0.6477 26.6118 24.0682
NOD/ShiLtJ m 28.6875 0.8869 30.429 26.946
NON/ShiLtJ f 32.11 0.7932 33.6677 30.5523
NON/ShiLtJ m 30.75 0.7932 32.3077 29.1923
NZW/LacJ f 29.94 0.7932 31.4977 28.3823
NZW/LacJ m 36.24 0.7932 37.7977 34.6823
PERA/EiJ f 24.2444 0.8362 25.8864 22.6025
PERA/EiJ m 26.9111 0.8362 28.5531 25.2692
SEA/GnJ f 26.5778 0.8362 28.2197 24.9358
SEA/GnJ m 28.32 0.7932 29.8777 26.7623
SJL/J f 21.0111 0.8362 22.6531 19.3692
SJL/J m 25.9733 0.6477 27.2452 24.7015
SM/J f 17.3111 0.8362 18.9531 15.6692
SM/J m 24.8889 0.8362 26.5308 23.2469
SPRET/EiJ f 19.025 1.2542 21.4879 16.5621
SPRET/EiJ m 15.9833 1.0241 17.9943 13.9724
SWR/J f 21.89 0.7932 23.4477 20.3323
SWR/J m 25.03 0.7932 26.5877 23.4723
WSB/EiJ f 12.5125 0.8869 14.254 10.771
WSB/EiJ m 14.5778 0.8362 16.2197 12.9358


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 25.4687 0.5949 26.637 24.3005
A/J both 21.995 0.5609 23.0965 20.8935
AKR/J both 38.5011 0.4242 39.3341 37.6682
BALB/cJ both 25.9622 0.5763 27.0939 24.8306
BTBR T+ Itpr3tf/J both 35.05 0.5609 36.1515 33.9485
BUB/BnJ both 29.0646 0.5725 30.1887 27.9404
C3H/HeJ both 26.75 0.5609 27.8515 25.6485
C57BL/10J both 24.7556 0.5531 25.8416 23.6695
C57BL/6J both 21.865 0.5609 22.9665 20.7635
C57BLKS/J both 23.4083 0.537 24.4629 22.3538
C57BR/cdJ both 26.4217 0.537 27.4762 25.3671
C57L/J both 23.95 0.5609 25.0515 22.8485
C58/J both 23.4657 0.5637 24.5727 22.3587
CAST/EiJ both 15.6375 0.6094 16.8343 14.4407
CBA/J both 32.9088 0.5949 34.077 31.7405
CZECHII/EiJ both 13.5506 0.4913 14.5152 12.5859
DBA/1J both 24.4208 0.5725 25.545 23.2967
DBA/2J both 29.5889 0.5913 30.7499 28.4279
FVB/NJ both 26.0978 0.5763 27.2294 24.9661
I/LnJ both 22.9708 0.5531 24.0569 21.8848
JF1/MsJ both 22.6686 0.6181 23.8823 21.4548
KK/HlJ both 33.5528 0.6094 34.7495 32.356
LP/J both 28.4667 0.5913 29.6277 27.3056
MA/MyJ both 24.2206 0.5763 25.3522 23.0889
MOLF/EiJ both 14.3571 0.6704 15.6736 13.0407
MSM/MsJ both 13.875 0.5725 14.9992 12.7508
NOD/ShiLtJ both 27.0137 0.5491 28.092 25.9355
NON/ShiLtJ both 31.43 0.5609 32.5315 30.3285
NZW/LacJ both 33.09 0.5609 34.1915 31.9885
PERA/EiJ both 25.5778 0.5913 26.7388 24.4167
SEA/GnJ both 27.4489 0.5763 28.5805 26.3173
SJL/J both 23.4922 0.5288 24.5307 22.4538
SM/J both 21.1 0.5913 22.261 19.939
SPRET/EiJ both 17.5042 0.8096 19.094 15.9144
SWR/J both 23.46 0.5609 24.5615 22.3585
WSB/EiJ both 13.5451 0.6094 14.7419 12.3484




  GWAS USING LINEAR MIXED MODELS