Project measure / variable:   Schoonjans1   soleus_wt_CD

ID, description, units MPD:112867   soleus_wt_CD   soleus muscle weight   [g]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   35 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - soleus muscle weight CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested35 strains
Mean of the strain means0.01556   g
Median of the strain means0.0156   g
SD of the strain means± 0.0020647
Coefficient of variation (CV)0.1327
Min–max range of strain means0.0116   –   0.01986   g
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 0.0007 0.0 2.9704 < 0.0001
Residuals 129 0.0009 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.0116 0.00140949   4 0.00070475 0.1215 0.0095, 0.0125 -1.92
BXD100 m 0.01625 0.00167899   6 0.00068544 0.1033 0.014, 0.0183 0.33
BXD11 m 0.01825 0.00170783   4 0.00085391 0.0936 0.016, 0.02 1.3
BXD12 m 0.01188 0.00051235   4 0.00025617 0.0431 0.0112, 0.0124 -1.78
BXD27 m 0.016 0.00135892   4 0.00067946 0.0849 0.0146, 0.0174 0.21
BXD32 m 0.0134 0.00201163   4 0.00100582 0.1501 0.0115, 0.0156 -1.05
BXD34 m 0.01734 0.00102372   5 0.00045782 0.059 0.0161, 0.0189 0.86
BXD39 m 0.01766 0.00203052   5 0.00090807 0.115 0.0147, 0.0198 1.02
BXD40 m 0.01444 0.00229521   5 0.00102645 0.1589 0.0106, 0.0166 -0.54
BXD43 m 0.01527 0.00205264   3 0.00118509 0.1345 0.013, 0.017 -0.14
BXD45 m 0.017 0.00141421   4 0.00070711 0.0832 0.016, 0.019 0.7
BXD48 m 0.01708 0.00251734   5 0.00112579 0.1474 0.014, 0.02 0.73
BXD48a m 0.01918 0.00356966   4 0.00178483 0.1862 0.017, 0.0245 1.75
BXD51 m 0.01614 0.00370783   5 0.00165819 0.2297 0.0116, 0.0198 0.28
BXD53 m 0.019 0.00254951   5 0.00114018 0.1342 0.016, 0.023 1.66
BXD55 m 0.01382 0.0014856   5 0.00066438 0.1075 0.0125, 0.0161 -0.84
BXD6 m 0.01616 0.00333362   5 0.00149084 0.2063 0.0128, 0.0214 0.29
BXD62 m 0.0148 0.00213659   5 0.00095551 0.1444 0.0118, 0.0177 -0.37
BXD63 m 0.0157 0.00206277   5 0.0009225 0.1314 0.0133, 0.0189 0.07
BXD64 m 0.01567 0.00152753   3 0.00088192 0.0975 0.014, 0.017 0.05
BXD66 m 0.01253 0.00203283   7 0.00076834 0.1623 0.01, 0.0155 -1.47
BXD67 m 0.01483 0.00459955   4 0.00229977 0.3103 0.0105, 0.0189 -0.36
BXD69 m 0.01824 0.00446576   5 0.00199715 0.2448 0.0125, 0.0244 1.3
BXD73 m 0.0168 0.00243413   5 0.00108858 0.1449 0.0138, 0.0192 0.6
BXD75 m 0.0144 0.00214709   5 0.00096021 0.1491 0.0125, 0.0176 -0.56
BXD77 m 0.01634 0.00538637   5 0.00240886 0.3296 0.0119, 0.0252 0.38
BXD79 m 0.01296 0.00119708   5 0.00053535 0.0924 0.0116, 0.0143 -1.26
BXD8 m 0.0156 0.00167332   5 0.00074833 0.1073 0.013, 0.017 0.02
BXD81 m 0.015 0.00298161   3 0.00172143 0.1988 0.0118, 0.0177 -0.27
BXD84 m 0.01542 0.00247931   5 0.00110878 0.1608 0.0135, 0.0196 -0.07
BXD87 m 0.01476 0.00071624   5 0.00032031 0.0485 0.0137, 0.0155 -0.39
BXD89 m 0.01216 0.00460793   5 0.00206073 0.3789 0.006, 0.0168 -1.65
BXD90 m 0.01408 0.00242425   5 0.00108416 0.1722 0.0118, 0.0177 -0.72
C57BL/6J m 0.01986 0.00151921   5 0.00067941 0.0765 0.0175, 0.0216 2.08
DBA/2J m 0.0151 0.00271385   5 0.00121367 0.1797 0.0107, 0.0179 -0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.0116 0.001302918 0.0141778551 0.0090221449
BXD100 m 0.01625 0.0010638281 0.0183548099 0.0141451901
BXD11 m 0.01825 0.001302918 0.0208278551 0.0156721449
BXD12 m 0.011875 0.001302918 0.0144528551 0.0092971449
BXD27 m 0.016 0.001302918 0.0185778551 0.0134221449
BXD32 m 0.0134 0.001302918 0.0159778551 0.0108221449
BXD34 m 0.01734 0.0011653652 0.0196457037 0.0150342963
BXD39 m 0.01766 0.0011653652 0.0199657037 0.0153542963
BXD40 m 0.01444 0.0011653652 0.0167457037 0.0121342963
BXD43 m 0.0152666667 0.0015044801 0.0182433173 0.012290016
BXD45 m 0.017 0.001302918 0.0195778551 0.0144221449
BXD48 m 0.01708 0.0011653652 0.0193857037 0.0147742963
BXD48a m 0.019175 0.001302918 0.0217528551 0.0165971449
BXD51 m 0.01614 0.0011653652 0.0184457037 0.0138342963
BXD53 m 0.019 0.0011653652 0.0213057037 0.0166942963
BXD55 m 0.01382 0.0011653652 0.0161257037 0.0115142963
BXD6 m 0.01616 0.0011653652 0.0184657037 0.0138542963
BXD62 m 0.0148 0.0011653652 0.0171057037 0.0124942963
BXD63 m 0.0157 0.0011653652 0.0180057037 0.0133942963
BXD64 m 0.0156666667 0.0015044801 0.0186433173 0.012690016
BXD66 m 0.0125285714 0.0009849134 0.0144772467 0.0105798962
BXD67 m 0.014825 0.001302918 0.0174028551 0.0122471449
BXD69 m 0.01824 0.0011653652 0.0205457037 0.0159342963
BXD73 m 0.0168 0.0011653652 0.0191057037 0.0144942963
BXD75 m 0.0144 0.0011653652 0.0167057037 0.0120942963
BXD77 m 0.01634 0.0011653652 0.0186457037 0.0140342963
BXD79 m 0.01296 0.0011653652 0.0152657037 0.0106542963
BXD8 m 0.0156 0.0011653652 0.0179057037 0.0132942963
BXD81 m 0.015 0.0015044801 0.0179766506 0.0120233494
BXD84 m 0.01542 0.0011653652 0.0177257037 0.0131142963
BXD87 m 0.01476 0.0011653652 0.0170657037 0.0124542963
BXD89 m 0.01216 0.0011653652 0.0144657037 0.0098542963
BXD90 m 0.01408 0.0011653652 0.0163857037 0.0117742963
C57BL/6J m 0.01986 0.0011653652 0.0221657037 0.0175542963
DBA/2J m 0.0151 0.0011653652 0.0174057037 0.0127942963




  GWAS USING LINEAR MIXED MODELS