Project measure / variable:   CSNA03   omit_cc_acq_JAX

ID, description, units MPD:110493   omit_cc_acq_JAX   total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC   [n]  acquisition  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means30.982   n 29.612   n
Median of the strain means21.214   n 20.333   n
SD of the strain means± 27.737 ± 25.023
Coefficient of variation (CV)0.8953 0.845
Min–max range of strain means1.0   –   123.3   n 2.0   –   123.0   n
Mean sample size per strain2.9   mice 2.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 856.0785 856.0785 1.285 0.2585
strain 31 108538.3263 3501.2363 5.2555 < 0.0001
sex:strain 31 36704.007 1184.0002 1.7772 0.0112
Residuals 174 115919.0714 666.2016


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 123.3 16.773   3 9.6839 0.136 104.0, 134.0 3.33
129S1/SvImJ m 48.25 47.12   4 23.56 0.9766 8.0, 98.0 0.74
A/J f 92.17 42.555   6 17.373 0.4617 10.0, 129.0 2.21
A/J m 96.0 34.183   5 15.287 0.3561 63.0, 142.0 2.65
C57BL/6J f 21.214 18.419   14 4.9227 0.8682 2.0, 64.0 -0.35
C57BL/6J m 14.3 14.275   10 4.5143 0.9983 1.0, 46.0 -0.61
CAST/EiJ f 18.125 12.392   8 4.3811 0.6837 2.0, 40.0 -0.46
CAST/EiJ m 50.0 62.19   8 21.987 1.2438 1.0, 176.0 0.81
CC001/UncJ f 66.0 11.533   3 6.6583 0.1747 57.0, 79.0 1.26
CC001/UncJ m 17.0 14.142   2   10.0 0.8319 7.0, 27.0 -0.5
CC002/UncJ f 25.75 5.7373   4 2.8687 0.2228 19.0, 33.0 -0.19
CC002/UncJ m 27.0 25.534   3 14.742 0.9457 5.0, 55.0 -0.1
CC003/UncJ f 19.5 26.163   2   18.5 1.3417 1.0, 38.0 -0.41
CC003/UncJ m 18.667 23.861   3 13.776 1.2783 2.0, 46.0 -0.44
CC004/TauUncJ f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -1.01
CC004/TauUncJ m 123.0 0.0   1   0.0 0.0 123.0, 123.0 3.73
CC005/TauUncJ f 27.333 33.724   3 19.471 1.2338 4.0, 66.0 -0.13
CC005/TauUncJ m 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -1.04
CC006/TauUncJ f 30.5 21.92   2   15.5 0.7187 15.0, 46.0 -0.02
CC006/TauUncJ m 15.0 19.799   2   14.0 1.3199 1.0, 29.0 -0.58
CC007/UncJ f 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.4
CC008/GeniUncJ f 14.0 0.0   1   0.0 0.0 14.0, 14.0 -0.61
CC008/GeniUncJ m 45.0 0.0   1   0.0 0.0 45.0, 45.0 0.61
CC009/UncJ f 10.5 13.435   2   9.5 1.2795 1.0, 20.0 -0.74
CC009/UncJ m 4.5 3.5355   2   2.5 0.7857 2.0, 7.0 -1.0
CC011/UncJ f 29.333 22.053   3 12.732 0.7518 5.0, 48.0 -0.06
CC011/UncJ m 15.667 9.2916   3 5.3645 0.5931 5.0, 22.0 -0.56
CC012/GeniUncJ f 10.0 4.5826   3 2.6458 0.4583 6.0, 15.0 -0.76
CC012/GeniUncJ m 19.0 0.0   1   0.0 0.0 19.0, 19.0 -0.42
CC013/GeniUncJ f 71.0 26.87   2   19.0 0.3785 52.0, 90.0 1.44
CC013/GeniUncJ m 62.5 33.234   2   23.5 0.5317 39.0, 86.0 1.31
CC015/UncJ f 99.0 0.0   1   0.0 0.0 99.0, 99.0 2.45
CC015/UncJ m 84.0 0.0   1   0.0 0.0 84.0, 84.0 2.17
CC016/GeniUncJ f 14.667 11.59   3 6.6916 0.7902 4.0, 27.0 -0.59
CC016/GeniUncJ m 5.5 2.8868   4 1.4434 0.5249 2.0, 9.0 -0.96
CC017/UncJ f 1.0 0.0   2   0.0 0.0 1.0, 1.0 -1.08
CC017/UncJ m 17.0 21.213   2   15.0 1.2478 2.0, 32.0 -0.5
CC018/UncJ f 83.5 54.45   2   38.5 0.6521 45.0, 122.0 1.89
CC018/UncJ m 12.0 5.6569   2   4.0 0.4714 8.0, 16.0 -0.7
CC019/TauUncJ f 5.5 3.6968   4 1.8484 0.6722 2.0, 10.0 -0.92
CC019/TauUncJ m 26.0 28.012   4 14.006 1.0774 11.0, 68.0 -0.14
CC023/GeniUncJ f 31.5 38.891   2   27.5 1.2346 4.0, 59.0 0.02
CC023/GeniUncJ m 65.0 0.0   1   0.0 0.0 65.0, 65.0 1.41
CC025/GeniUncJ f 68.33 8.9629   3 5.1747 0.1312 58.0, 74.0 1.35
CC025/GeniUncJ m 20.333 15.567   3 8.9876 0.7656 4.0, 35.0 -0.37
CC026/GeniUncJ f 17.0 0.0   1   0.0 0.0 17.0, 17.0 -0.5
CC026/GeniUncJ m 22.0 16.971   2   12.0 0.7714 10.0, 34.0 -0.3
CC027/GeniUncJ f 32.0 28.284   2   20.0 0.8839 12.0, 52.0 0.04
CC027/GeniUncJ m 62.5 46.314   4 23.157 0.741 19.0, 127.0 1.31
CC028/GeniUncJ f 73.33 60.28   3 34.801 0.822 10.0, 130.0 1.53
CC028/GeniUncJ m 19.0 10.536   3 6.0828 0.5545 9.0, 30.0 -0.42
CC029/UncJ f 11.0 0.0   1   0.0 0.0 11.0, 11.0 -0.72
CC029/UncJ m 10.0 0.0   1   0.0 0.0 10.0, 10.0 -0.78
CC030/GeniUncJ f 4.0 2.8284   2   2.0 0.7071 2.0, 6.0 -0.97
CC030/GeniUncJ m 4.0 0.0   1   0.0 0.0 4.0, 4.0 -1.02
CC032/GeniUncJ f 20.0 19.799   2   14.0 0.9899 6.0, 34.0 -0.4
CC033/GeniUncJ f 35.5 0.70711   2   0.5 0.0199 35.0, 36.0 0.16
CC033/GeniUncJ m 16.0 9.8995   2   7.0 0.6187 9.0, 23.0 -0.54
CC035/UncJ m 17.0 0.0   1   0.0 0.0 17.0, 17.0 -0.5
CC036/UncJ f 22.667 6.0277   3 3.4801 0.2659 17.0, 29.0 -0.3
CC036/UncJ m 25.333 11.06   3 6.3857 0.4366 15.0, 37.0 -0.17
CC037/TauUncJ f 58.5 4.9497   2   3.5 0.0846 55.0, 62.0 0.99
CC037/TauUncJ m 36.333 50.82   3 29.339 1.3986 6.0, 95.0 0.27
CC040/TauUncJ f 10.667 10.263   3 5.9255 0.9622 2.0, 22.0 -0.73
CC040/TauUncJ m 17.5 3.5355   2   2.5 0.202 15.0, 20.0 -0.48
CC041/TauUncJ f 19.333 20.648   3 11.921 1.068 5.0, 43.0 -0.42
CC041/TauUncJ m 36.5 16.263   2   11.5 0.4456 25.0, 48.0 0.28
CC043/GeniUncJ f 35.0 42.426   2   30.0 1.2122 5.0, 65.0 0.14
CC043/GeniUncJ m 63.0 0.0   1   0.0 0.0 63.0, 63.0 1.33
CC044/UncJ f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -1.01
CC051/TauUncJ f 62.0 0.0   1   0.0 0.0 62.0, 62.0 1.12
CC051/TauUncJ m 29.0 0.0   1   0.0 0.0 29.0, 29.0 -0.02
CC057/UncJ f 6.0 4.2426   2   3.0 0.7071 3.0, 9.0 -0.9
CC057/UncJ m 33.0 2.8284   2   2.0 0.0857 31.0, 35.0 0.14
CC059/TauUncJ f 19.25 18.518   4 9.259 0.962 5.0, 46.0 -0.42
CC059/TauUncJ m 32.5 24.772   4 12.386 0.7622 7.0, 62.0 0.12
CC060/UncJ f 13.0 0.0   1   0.0 0.0 13.0, 13.0 -0.65
CC060/UncJ m 26.0 0.0   1   0.0 0.0 26.0, 26.0 -0.14
CC061/GeniUncJ f 36.667 22.855   3 13.195 0.6233 22.0, 63.0 0.2
CC061/GeniUncJ m 35.5 14.849   2   10.5 0.4183 25.0, 46.0 0.24
CC074/UncJ f 44.0 0.0   1   0.0 0.0 44.0, 44.0 0.47
CC074/UncJ m 31.0 0.0   1   0.0 0.0 31.0, 31.0 0.06
CC075/UncJ f 2.5 2.1213   2   1.5 0.8485 1.0, 4.0 -1.03
CC075/UncJ m 16.0 0.0   1   0.0 0.0 16.0, 16.0 -0.54
CC078/TauUncJ f 6.0 5.5678   3 3.2146 0.928 1.0, 12.0 -0.9
CC078/TauUncJ m 7.3333 4.6188   3 2.6667 0.6298 2.0, 10.0 -0.89
CC079/TauUncJ f 18.0 0.0   1   0.0 0.0 18.0, 18.0 -0.47
CC079/TauUncJ m 15.0 16.971   2   12.0 1.1314 3.0, 27.0 -0.58
CC080/TauUncJ f 31.0 24.042   2   17.0 0.7755 14.0, 48.0 0.0
CC080/TauUncJ m 10.0 0.0   1   0.0 0.0 10.0, 10.0 -0.78
CC084/TauJ f 36.5 47.376   2   33.5 1.298 3.0, 70.0 0.2
CC084/TauJ m 47.0 18.385   2   13.0 0.3912 34.0, 60.0 0.69
NOD/ShiLtJ f 14.75 21.94   8 7.7569 1.4874 1.0, 67.0 -0.59
NOD/ShiLtJ m 25.9 20.766   10 6.5667 0.8018 3.0, 64.0 -0.15
NZO/HlLtJ f 29.0 22.627   2   16.0 0.7803 13.0, 45.0 -0.07
NZO/HlLtJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -1.1
PWK/PhJ f 4.4286 3.994   7 1.5096 0.9019 1.0, 13.0 -0.96
PWK/PhJ m 8.375 10.07   8 3.5604 1.2024 1.0, 28.0 -0.85
WSB/EiJ f 29.75 31.689   8 11.204 1.0652 2.0, 103.0 -0.04
WSB/EiJ m 14.0 6.1319   6 2.5033 0.438 7.0, 22.0 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 123.3333333333 14.9019188914 152.7451230852 93.9215435815
129S1/SvImJ m 48.25 12.9054403251 73.7213570958 22.7786429042
A/J f 92.1666666667 10.5372479008 112.963942647 71.3693906863
A/J m 96.0 11.5429767386 118.7822743782 73.2177256218
C57BL/6J f 21.2142857143 6.8982480174 34.8292987755 7.599272653
C57BL/6J m 14.3 8.1621171269 30.4095007037 -1.8095007037
CAST/EiJ f 18.125 9.125524368 36.1359693285 0.1140306715
CAST/EiJ m 50.0 9.125524368 68.0109693285 31.9890306715
CC001/UncJ f 66.0 14.9019188914 95.4117897518 36.5882102482
CC001/UncJ m 17.0 18.2510487361 53.021938657 -19.021938657
CC002/UncJ f 25.75 12.9054403251 51.2213570958 0.2786429042
CC002/UncJ m 27.0 14.9019188914 56.4117897518 -2.4117897518
CC003/UncJ f 19.5 18.2510487361 55.521938657 -16.521938657
CC003/UncJ m 18.6666666667 14.9019188914 48.0784564185 -10.7451230852
CC005/TauUncJ f 27.3333333333 14.9019188914 56.7451230852 -2.0784564185
CC005/TauUncJ m 3.5 18.2510487361 39.521938657 -32.521938657
CC006/TauUncJ f 30.5 18.2510487361 66.521938657 -5.521938657
CC006/TauUncJ m 15.0 18.2510487361 51.021938657 -21.021938657
CC009/UncJ f 10.5 18.2510487361 46.521938657 -25.521938657
CC009/UncJ m 4.5 18.2510487361 40.521938657 -31.521938657
CC011/UncJ f 29.3333333333 14.9019188914 58.7451230852 -0.0784564185
CC011/UncJ m 15.6666666667 14.9019188914 45.0784564185 -13.7451230852
CC013/GeniUncJ f 71.0 18.2510487361 107.021938657 34.978061343
CC013/GeniUncJ m 62.5 18.2510487361 98.521938657 26.478061343
CC016/GeniUncJ f 14.6666666667 14.9019188914 44.0784564185 -14.7451230852
CC016/GeniUncJ m 5.5 12.9054403251 30.9713570958 -19.9713570958
CC017/UncJ f 1.0 18.2510487361 37.021938657 -35.021938657
CC017/UncJ m 17.0 18.2510487361 53.021938657 -19.021938657
CC018/UncJ f 83.5 18.2510487361 119.521938657 47.478061343
CC018/UncJ m 12.0 18.2510487361 48.021938657 -24.021938657
CC019/TauUncJ f 5.5 12.9054403251 30.9713570958 -19.9713570958
CC019/TauUncJ m 26.0 12.9054403251 51.4713570958 0.5286429042
CC025/GeniUncJ f 68.3333333333 14.9019188914 97.7451230852 38.9215435815
CC025/GeniUncJ m 20.3333333333 14.9019188914 49.7451230852 -9.0784564185
CC027/GeniUncJ f 32.0 18.2510487361 68.021938657 -4.021938657
CC027/GeniUncJ m 62.5 12.9054403251 87.9713570958 37.0286429042
CC028/GeniUncJ f 73.3333333333 14.9019188914 102.7451230852 43.9215435815
CC028/GeniUncJ m 19.0 14.9019188914 48.4117897518 -10.4117897518
CC033/GeniUncJ f 35.5 18.2510487361 71.521938657 -0.521938657
CC033/GeniUncJ m 16.0 18.2510487361 52.021938657 -20.021938657
CC036/UncJ f 22.6666666667 14.9019188914 52.0784564185 -6.7451230852
CC036/UncJ m 25.3333333333 14.9019188914 54.7451230852 -4.0784564185
CC037/TauUncJ f 58.5 18.2510487361 94.521938657 22.478061343
CC037/TauUncJ m 36.3333333333 14.9019188914 65.7451230852 6.9215435815
CC040/TauUncJ f 10.6666666667 14.9019188914 40.0784564185 -18.7451230852
CC040/TauUncJ m 17.5 18.2510487361 53.521938657 -18.521938657
CC041/TauUncJ f 19.3333333333 14.9019188914 48.7451230852 -10.0784564185
CC041/TauUncJ m 36.5 18.2510487361 72.521938657 0.478061343
CC057/UncJ f 6.0 18.2510487361 42.021938657 -30.021938657
CC057/UncJ m 33.0 18.2510487361 69.021938657 -3.021938657
CC059/TauUncJ f 19.25 12.9054403251 44.7213570958 -6.2213570958
CC059/TauUncJ m 32.5 12.9054403251 57.9713570958 7.0286429042
CC061/GeniUncJ f 36.6666666667 14.9019188914 66.0784564185 7.2548769148
CC061/GeniUncJ m 35.5 18.2510487361 71.521938657 -0.521938657
CC078/TauUncJ f 6.0 14.9019188914 35.4117897518 -23.4117897518
CC078/TauUncJ m 7.3333333333 14.9019188914 36.7451230852 -22.0784564185
CC084/TauJ f 36.5 18.2510487361 72.521938657 0.478061343
CC084/TauJ m 47.0 18.2510487361 83.021938657 10.978061343
NOD/ShiLtJ f 14.75 9.125524368 32.7609693285 -3.2609693285
NOD/ShiLtJ m 25.9 8.1621171269 42.0095007037 9.7904992963
PWK/PhJ f 4.4285714286 9.7555959028 23.6831075517 -14.8259646946
PWK/PhJ m 8.375 9.125524368 26.3859693285 -9.6359693285
WSB/EiJ f 29.75 9.125524368 47.7609693285 11.7390306715
WSB/EiJ m 14.0 10.5372479008 34.7972759803 -6.7972759803


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 85.7916666667 9.8566928611 105.2457369908 66.3375963425
A/J both 94.0833333333 7.814632194 109.5070059994 78.6596606672
C57BL/6J both 17.7571428571 5.3433599379 28.3032866261 7.2109990882
CAST/EiJ both 34.0625 6.4527201625 46.7981785479 21.3268214521
CC001/UncJ both 41.5 11.7810013009 64.7520614194 18.2479385806
CC002/UncJ both 26.375 9.8566928611 45.8290703242 6.9209296758
CC003/UncJ both 19.0833333333 11.7810013009 42.3353947528 -4.1687280861
CC005/TauUncJ both 15.4166666667 11.7810013009 38.6687280861 -7.8353947528
CC006/TauUncJ both 22.75 12.9054403251 48.2213570958 -2.7213570958
CC009/UncJ both 7.5 12.9054403251 32.9713570958 -17.9713570958
CC011/UncJ both 22.5 10.5372479008 43.2972759803 1.7027240197
CC013/GeniUncJ both 66.75 12.9054403251 92.2213570958 41.2786429042
CC016/GeniUncJ both 10.0833333333 9.8566928611 29.5374036575 -9.3707369908
CC017/UncJ both 9.0 12.9054403251 34.4713570958 -16.4713570958
CC018/UncJ both 47.75 12.9054403251 73.2213570958 22.2786429042
CC019/TauUncJ both 15.75 9.125524368 33.7609693285 -2.2609693285
CC025/GeniUncJ both 44.3333333333 10.5372479008 65.1306093137 23.536057353
CC027/GeniUncJ both 47.25 11.1764391685 69.3088423139 25.1911576861
CC028/GeniUncJ both 46.1666666667 10.5372479008 66.963942647 25.3693906863
CC033/GeniUncJ both 25.75 12.9054403251 51.2213570958 0.2786429042
CC036/UncJ both 24.0 10.5372479008 44.7972759803 3.2027240197
CC037/TauUncJ both 47.4166666667 11.7810013009 70.6687280861 24.1646052472
CC040/TauUncJ both 14.0833333333 11.7810013009 37.3353947528 -9.1687280861
CC041/TauUncJ both 27.9166666667 11.7810013009 51.1687280861 4.6646052472
CC057/UncJ both 19.5 12.9054403251 44.9713570958 -5.9713570958
CC059/TauUncJ both 25.875 9.125524368 43.8859693285 7.8640306715
CC061/GeniUncJ both 36.0833333333 11.7810013009 59.3353947528 12.8312719139
CC078/TauUncJ both 6.6666666667 10.5372479008 27.463942647 -14.1306093137
CC084/TauJ both 41.75 12.9054403251 67.2213570958 16.2786429042
NOD/ShiLtJ both 20.325 6.1215878452 32.4071255278 8.2428744722
PWK/PhJ both 6.4017857143 6.6791999224 19.5844654255 -6.7808939969
WSB/EiJ both 21.875 6.9697343621 35.6311050479 8.1188949521




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA