Project measure / variable:   CSNA03   latency_in_rev_JAX

ID, description, units MPD:110472   latency_in_rev_JAX   latency (reversal learning assay), founders    reversal   informational
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - latency (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means75273.0   None 96332.0   None
Median of the strain means68958.0   None 93146.0   None
SD of the strain means± 40813.0 ± 40138.0
Coefficient of variation (CV)0.5422 0.4167
Min–max range of strain means25462.0   –   142979.0   None 48532.0   –   174929.0   None
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13237140983.6569 13237140983.6569 1.6315 0.2045
strain 7 118703554123.0826 16957650589.0118 2.0901 0.0514
sex:strain 7 18589552378.1094 2655650339.7299 0.3273 0.9399
Residuals 100 811348096176.5994 8113480961.766


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 142979.0 123846.0   3 71503.0 0.8662 8058.0, 251490.0 1.66
129S1/SvImJ m 124315.0 114513.0   4 57256.0 0.9211 21978.0, 268991.0 0.7
A/J f 93203.0 92265.0   6 37667.0 0.9899 25098.0, 273059.0 0.44
A/J m 174929.0 199949.0   5 89420.0 1.143 24524.0, 496646.0 1.96
C57BL/6J f 79053.0 75324.0   14 20131.0 0.9528 7750.0, 300482.0 0.09
C57BL/6J m 94132.0 93387.0   11 28157.0 0.9921 15472.0, 281672.0 -0.05
CAST/EiJ f 32284.0 20087.0   10 6352.0 0.6222 4806.0, 65888.0 -1.05
CAST/EiJ m 66978.0 95400.0   8 33729.0 1.4244 8655.0, 274817.0 -0.73
NOD/ShiLtJ f 25462.0 18917.0   8 6688.0 0.743 2608.0, 60379.0 -1.22
NOD/ShiLtJ m 48532.0 47515.0   11 14326.0 0.979 4638.0, 140286.0 -1.19
NZO/HlLtJ f 58864.0 61039.0   3 35241.0 1.0369 20788.0, 129267.0 -0.4
NZO/HlLtJ m 63803.0 73037.0   2   51645.0 1.1447 12158.0, 115448.0 -0.81
PWK/PhJ f 53977.0 63799.0   9 21266.0 1.182 12379.0, 220455.0 -0.52
PWK/PhJ m 92160.0 65021.0   8 22989.0 0.7055 4252.0, 189222.0 -0.1
WSB/EiJ f 116362.0 118087.0   8 41750.0 1.0148 8716.0, 363368.0 1.01
WSB/EiJ m 105810.0 150269.0   6 61347.0 1.4202 7379.0, 402195.0 0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 142978.6666666667 52004.7464557035 246154.6024628211 39802.7308705124
129S1/SvImJ m 124315.2499999997 45037.4315480079 213668.2314587015 34962.2685412978
A/J f 93203.1666666667 36772.9088727149 166159.5705233952 20246.7628099383
A/J m 174929.4000000002 40282.7033893357 254849.1362135744 95009.663786426
C57BL/6J f 79052.5714285714 24073.5197761328 126813.7490150323 31291.3938421105
C57BL/6J m 94132.1818181816 27158.5930847377 148014.0569814719 40250.3066548913
CAST/EiJ f 32283.6000000001 28484.1727311256 88795.3874272584 -24228.1874272582
CAST/EiJ m 66977.8749999999 31846.2732548214 130159.9741086839 3795.7758913158
NOD/ShiLtJ f 25461.6250000001 31846.2732548213 88643.7241086839 -37720.4741086837
NOD/ShiLtJ m 48532.3636363638 27158.5930847378 102414.2387996542 -5349.5115269266
NZO/HlLtJ f 58864.0000000003 52004.7464557034 162039.9357961545 -44311.935796154
NZO/HlLtJ m 63802.9999999997 63692.5465096428 190167.1982173677 -62561.1982173682
PWK/PhJ f 53976.8888888888 30024.9543653386 113545.54319469 -5591.7654169124
PWK/PhJ m 92159.4999999999 31846.2732548214 155341.5991086838 28977.400891316
WSB/EiJ f 116362.5 31846.2732548213 179544.5991086839 53180.4008913161
WSB/EiJ m 105809.4999999999 36772.908872715 178765.9038567283 32853.0961432714


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 133646.9583333332 34397.9065291898 201891.425184081 65402.4914825854
A/J both 134066.2833333335 27271.5191147936 188172.2005239545 79960.3661427124
C57BL/6J both 86592.3766233765 18146.098291053 122593.7188051545 50591.0344415985
CAST/EiJ both 49630.7375 21363.1295483442 92014.5780704438 7246.8969295561
NOD/ShiLtJ both 36996.994318182 20927.1014390617 78515.7675385336 -4521.7789021697
NZO/HlLtJ both 61333.5 41113.3619848979 142901.2392087864 -20234.2392087864
PWK/PhJ both 73068.1944444444 21884.2580686519 116485.9391566689 29650.4497322198
WSB/EiJ both 111085.9999999999 24322.9929654111 159342.1252886242 62829.8747113757




  GWAS USING LINEAR MIXED MODELS