Project measure / variable:   Tordoff3   pct_lean

ID, description, units MPD:10332   pct_lean   percent lean, head excluded   [%]  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 14-18wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Tordoff3 - percent lean, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means77.1   % 74.0   %
Median of the strain means78.5   % 75.2   %
SD of the strain means± 5.20 ± 6.25
Coefficient of variation (CV)0.0675 0.0844
Min–max range of strain means56.5   –   83.3   % 57.0   –   83.6   %
Mean sample size per strain9.7   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2149.719 2149.719 122.3941 < 0.0001
strain 39 21158.6576 542.5297 30.8889 < 0.0001
sex:strain 39 4684.2038 120.1078 6.8383 < 0.0001
Residuals 707 12417.686 17.5639


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 78.4 2.42   10 0.764 0.0308 75.5, 82.6 0.25
129S1/SvImJ m 74.5 2.91   9 0.968 0.039 71.5, 80.7 0.08
A/J f 76.2 3.84   10 1.21 0.0504 67.2, 80.2 -0.18
A/J m 73.3 8.6   10 2.72 0.117 51.7, 82.2 -0.11
AKR/J f 76.3 5.66   9 1.89 0.0742 63.8, 81.1 -0.16
AKR/J m 68.0 3.4   10 1.08 0.0501 61.9, 71.9 -0.96
BALB/cByJ f 80.5 1.99   9 0.664 0.0247 76.9, 83.3 0.65
BALB/cByJ m 76.8 2.79   10 0.881 0.0363 71.1, 81.9 0.45
BTBR T+ Itpr3tf/J f 80.0 1.92   10 0.608 0.0241 76.4, 82.8 0.55
BTBR T+ Itpr3tf/J m 76.9 3.49   10 1.1 0.0454 71.0, 81.3 0.46
BUB/BnJ f 79.6 2.08   10 0.659 0.0262 76.3, 82.1 0.48
BUB/BnJ m 75.7 4.52   9 1.51 0.0597 68.9, 81.8 0.27
C3H/HeJ f 79.2 2.34   10 0.738 0.0295 75.8, 82.0 0.4
C3H/HeJ m 75.2 2.69   10 0.85 0.0357 71.2, 78.5 0.19
C57BL/10J f 80.3 1.79   10 0.565 0.0222 77.0, 82.6 0.61
C57BL/10J m 73.6 3.53   10 1.11 0.0479 68.7, 80.2 -0.07
C57BL/6J f 78.0 9.58   9 3.19 0.123 52.9, 83.9 0.17
C57BL/6J m 77.8 3.59   9 1.2 0.0462 71.6, 81.5 0.61
C57BLKS/J f 80.4 1.31   10 0.415 0.0163 78.0, 82.4 0.63
C57BLKS/J m 76.2 2.88   8 1.02 0.0378 70.9, 80.1 0.35
C57BR/cdJ f 81.9 1.29   15 0.333 0.0158 79.7, 84.1 0.92
C57BR/cdJ m 73.5 5.67   13 1.57 0.0771 65.1, 81.6 -0.08
C57L/J f 82.5 1.66   10 0.525 0.0201 79.6, 85.6 1.03
C57L/J m 77.1 3.89   10 1.23 0.0505 71.8, 82.9 0.49
C58/J f 83.3 1.61   9 0.535 0.0193 80.6, 85.0 1.19
C58/J m 83.6 1.68   9 0.561 0.0201 81.2, 85.5 1.54
CAST/EiJ f 79.7 1.52   10 0.481 0.0191 77.0, 81.4 0.5
CAST/EiJ m 80.7 2.33   10 0.737 0.0289 76.2, 84.7 1.07
CBA/J f 75.9 4.56   10 1.44 0.06 69.8, 83.6 -0.23
CBA/J m 66.3 2.89   10 0.913 0.0436 60.3, 69.6 -1.23
CE/J f 76.6 2.47   9 0.823 0.0322 72.5, 79.0 -0.1
CE/J m 74.4 1.24   8 0.439 0.0167 72.4, 75.6 0.06
CZECHII/EiJ f 80.3 1.97   9 0.656 0.0245 76.0, 82.4 0.61
CZECHII/EiJ m 83.2 1.04   10 0.33 0.0125 81.2, 84.3 1.47
DBA/2J f 78.8 1.9   10 0.601 0.0241 75.7, 81.1 0.32
DBA/2J m 69.8 6.35   10 2.01 0.0909 55.0, 76.6 -0.67
FVB/NJ f 76.2 9.39   10 2.97 0.123 50.0, 81.8 -0.18
FVB/NJ m 77.5 2.08   10 0.656 0.0268 74.4, 81.0 0.56
I/LnJ f 82.5 2.04   10 0.644 0.0247 77.5, 84.0 1.03
I/LnJ m 80.9 4.56   10 1.44 0.0564 71.0, 85.1 1.1
JF1/MsJ f 73.8 6.8   10 2.15 0.0921 58.2, 80.6 -0.64
JF1/MsJ m 57.0 9.39   10 2.97 0.165 49.5, 74.6 -2.72
KK/HlJ f 56.5 2.42   10 0.764 0.0427 53.2, 59.4 -3.96
KK/HlJ m 67.3 5.45   10 1.72 0.081 64.4, 82.2 -1.07
LP/J f 77.5 2.24   10 0.708 0.0289 73.8, 80.6 0.07
LP/J m 69.0 4.32   10 1.37 0.0625 61.1, 74.7 -0.8
MA/MyJ f 73.8 4.01   8 1.42 0.0544 67.0, 79.1 -0.64
MA/MyJ m 66.4 3.35   15 0.866 0.0505 59.9, 71.5 -1.22
MOLF/EiJ f 78.1 1.59   9 0.531 0.0204 76.0, 80.7 0.19
MOLF/EiJ m 80.7 1.6   10 0.507 0.0199 78.9, 84.1 1.07
MSM/MsJ f 80.7 1.26   10 0.399 0.0156 79.5, 82.7 0.69
MSM/MsJ m 79.7 2.49   10 0.787 0.0312 75.8, 83.6 0.91
NOD/ShiLtJ f 78.6 3.5   8 1.24 0.0446 73.0, 84.2 0.28
NOD/ShiLtJ m 76.8 3.16   10 0.998 0.0411 71.7, 80.8 0.45
NON/ShiLtJ f 65.4 6.27   10 1.98 0.096 54.9, 73.5 -2.25
NON/ShiLtJ m 57.1 1.75   10 0.554 0.0307 54.9, 60.1 -2.71
NZB/BlNJ f 73.0 4.41   10 1.4 0.0605 66.1, 80.4 -0.79
NZB/BlNJ m 75.2 5.71   10 1.81 0.0759 68.1, 83.5 0.19
NZW/LacJ f 71.2 4.01   10 1.27 0.0564 66.0, 76.3 -1.14
NZW/LacJ m 76.0 3.18   10 1.01 0.0419 70.3, 79.8 0.32
PERA/EiJ f 66.6 5.22   10 1.65 0.0784 60.2, 74.0 -2.02
PERA/EiJ m 67.7 6.48   10 2.05 0.0958 50.2, 73.8 -1.01
PL/J f 75.7 2.11   10 0.666 0.0278 71.7, 78.5 -0.27
PL/J m 66.6 6.05   10 1.91 0.0908 50.7, 71.5 -1.19
PWK/PhJ f 77.8 3.24   10 1.02 0.0416 72.8, 83.5 0.13
PWK/PhJ m 78.2 2.08   10 0.659 0.0267 75.1, 81.1 0.67
RIIIS/J f 72.7 5.86   10 1.85 0.0806 63.1, 78.5 -0.85
RIIIS/J m 68.8 4.69   10 1.48 0.0682 63.7, 77.0 -0.83
SEA/GnJ f 78.7 1.54   10 0.488 0.0196 75.9, 81.8 0.3
SEA/GnJ m 72.7 4.32   10 1.37 0.0595 64.5, 81.2 -0.21
SJL/J f 78.5 4.29   10 1.36 0.0546 68.5, 83.2 0.27
SJL/J m 74.6 8.63   10 2.73 0.116 52.7, 81.2 0.09
SM/J f 80.1 2.08   10 0.657 0.026 77.1, 83.1 0.57
SM/J m 75.3 8.62   10 2.73 0.115 52.8, 82.5 0.21
SPRET/EiJ f 74.7 2.32   9 0.775 0.0311 71.4, 77.9 -0.46
SPRET/EiJ m 71.9 3.62   5 1.62 0.0504 67.9, 76.6 -0.34
SWR/J f 82.3 3.44   10 1.09 0.0418 74.4, 85.5 1.0
SWR/J m 83.0 1.31   9 0.438 0.0158 81.3, 85.0 1.44
WSB/EiJ f 82.5 1.69   10 0.533 0.0204 78.5, 85.1 1.03
WSB/EiJ m 81.4 1.89   10 0.597 0.0232 78.3, 83.9 1.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 78.38 1.3253 80.982 75.778
129S1/SvImJ m 74.4889 1.397 77.2316 71.7462
A/J f 76.21 1.3253 78.812 73.608
A/J m 73.35 1.3253 75.952 70.748
AKR/J f 76.3222 1.397 79.0649 73.5795
AKR/J m 68.0 1.3253 70.602 65.398
BALB/cByJ f 80.5 1.397 83.2427 77.7573
BALB/cByJ m 76.77 1.3253 79.372 74.168
BTBR T+ Itpr3tf/J f 80.0 1.3253 82.602 77.398
BTBR T+ Itpr3tf/J m 76.92 1.3253 79.522 74.318
BUB/BnJ f 79.6 1.3253 82.202 76.998
BUB/BnJ m 75.6778 1.397 78.4205 72.9351
C3H/HeJ f 79.18 1.3253 81.782 76.578
C3H/HeJ m 75.25 1.3253 77.852 72.648
C57BL/10J f 80.34 1.3253 82.942 77.738
C57BL/10J m 73.56 1.3253 76.162 70.958
C57BL/6J f 77.9889 1.397 80.7316 75.2462
C57BL/6J m 77.8333 1.397 80.5761 75.0906
C57BLKS/J f 80.36 1.3253 82.962 77.758
C57BLKS/J m 76.2 1.4817 79.1091 73.2909
C57BR/cdJ f 81.8733 1.0821 83.9978 79.7488
C57BR/cdJ m 73.4923 1.1624 75.7744 71.2102
C57L/J f 82.55 1.3253 85.152 79.948
C57L/J m 77.11 1.3253 79.712 74.508
C58/J f 83.2778 1.397 86.0205 80.5351
C58/J m 83.5778 1.397 86.3205 80.8351
CAST/EiJ f 79.68 1.3253 82.282 77.078
CAST/EiJ m 80.66 1.3253 83.262 78.058
CBA/J f 75.92 1.3253 78.522 73.318
CBA/J m 66.25 1.3253 68.852 63.648
CE/J f 76.6444 1.397 79.3872 73.9017
CE/J m 74.3625 1.4817 77.2716 71.4534
CZECHII/EiJ f 80.2556 1.397 82.9983 77.5128
CZECHII/EiJ m 83.25 1.3253 85.852 80.648
DBA/2J f 78.85 1.3253 81.452 76.248
DBA/2J m 69.79 1.3253 72.392 67.188
FVB/NJ f 76.15 1.3253 78.752 73.548
FVB/NJ m 77.5 1.3253 80.102 74.898
I/LnJ f 82.45 1.3253 85.052 79.848
I/LnJ m 80.87 1.3253 83.472 78.268
JF1/MsJ f 73.77 1.3253 76.372 71.168
JF1/MsJ m 56.95 1.3253 59.552 54.348
KK/HlJ f 56.54 1.3253 59.142 53.938
KK/HlJ m 67.33 1.3253 69.932 64.728
LP/J f 77.45 1.3253 80.052 74.848
LP/J m 69.04 1.3253 71.642 66.438
MA/MyJ f 73.775 1.4817 76.6841 70.8659
MA/MyJ m 66.36 1.0821 68.4845 64.2355
MOLF/EiJ f 78.0667 1.397 80.8094 75.3239
MOLF/EiJ m 80.66 1.3253 83.262 78.058
MSM/MsJ f 80.67 1.3253 83.272 78.068
MSM/MsJ m 79.73 1.3253 82.332 77.128
NOD/ShiLtJ f 78.6375 1.4817 81.5466 75.7284
NOD/ShiLtJ m 76.77 1.3253 79.372 74.168
NON/ShiLtJ f 65.38 1.3253 67.982 62.778
NON/ShiLtJ m 57.1 1.3253 59.702 54.498
NZB/BlNJ f 72.99 1.3253 75.592 70.388
NZB/BlNJ m 75.17 1.3253 77.772 72.568
NZW/LacJ f 71.17 1.3253 73.772 68.568
NZW/LacJ m 75.97 1.3253 78.572 73.368
PERA/EiJ f 66.64 1.3253 69.242 64.038
PERA/EiJ m 67.68 1.3253 70.282 65.078
PL/J f 75.72 1.3253 78.322 73.118
PL/J m 66.63 1.3253 69.232 64.028
PWK/PhJ f 77.8 1.3253 80.402 75.198
PWK/PhJ m 78.19 1.3253 80.792 75.588
RIIIS/J f 72.75 1.3253 75.352 70.148
RIIIS/J m 68.75 1.3253 71.352 66.148
SEA/GnJ f 78.7 1.3253 81.302 76.098
SEA/GnJ m 72.66 1.3253 75.262 70.058
SJL/J f 78.48 1.3253 81.082 75.878
SJL/J m 74.61 1.3253 77.212 72.008
SM/J f 80.1 1.3253 82.702 77.498
SM/J m 75.25 1.3253 77.852 72.648
SPRET/EiJ f 74.6556 1.397 77.3983 71.9128
SPRET/EiJ m 71.86 1.8742 75.5397 68.1803
SWR/J f 82.26 1.3253 84.862 79.658
SWR/J m 82.9556 1.397 85.6983 80.2128
WSB/EiJ f 82.5 1.3253 85.102 79.898
WSB/EiJ m 81.44 1.3253 84.042 78.838


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 76.4344 0.9628 78.3247 74.5442
A/J both 74.78 0.9371 76.6199 72.9401
AKR/J both 72.1611 0.9628 74.0514 70.2708
BALB/cByJ both 78.635 0.9628 80.5253 76.7447
BTBR T+ Itpr3tf/J both 78.46 0.9371 80.2999 76.6201
BUB/BnJ both 77.6389 0.9628 79.5292 75.7486
C3H/HeJ both 77.215 0.9371 79.0549 75.3751
C57BL/10J both 76.95 0.9371 78.7899 75.1101
C57BL/6J both 77.9111 0.9878 79.8505 75.9717
C57BLKS/J both 78.28 0.994 80.2315 76.3285
C57BR/cdJ both 77.6828 0.794 79.2418 76.1239
C57L/J both 79.83 0.9371 81.6699 77.9901
C58/J both 83.4278 0.9878 85.3672 81.4884
CAST/EiJ both 80.17 0.9371 82.0099 78.3301
CBA/J both 71.085 0.9371 72.9249 69.2451
CE/J both 75.5035 1.0182 77.5026 73.5044
CZECHII/EiJ both 81.7528 0.9628 83.6431 79.8625
DBA/2J both 74.32 0.9371 76.1599 72.4801
FVB/NJ both 76.825 0.9371 78.6649 74.9851
I/LnJ both 81.66 0.9371 83.4999 79.8201
JF1/MsJ both 65.36 0.9371 67.1999 63.5201
KK/HlJ both 61.935 0.9371 63.7749 60.0951
LP/J both 73.245 0.9371 75.0849 71.4051
MA/MyJ both 70.0675 0.9174 71.8686 68.2664
MOLF/EiJ both 79.3633 0.9628 81.2536 77.473
MSM/MsJ both 80.2 0.9371 82.0399 78.3601
NOD/ShiLtJ both 77.7038 0.994 79.6552 75.7523
NON/ShiLtJ both 61.24 0.9371 63.0799 59.4001
NZB/BlNJ both 74.08 0.9371 75.9199 72.2401
NZW/LacJ both 73.57 0.9371 75.4099 71.7301
PERA/EiJ both 67.16 0.9371 68.9999 65.3201
PL/J both 71.175 0.9371 73.0149 69.3351
PWK/PhJ both 77.995 0.9371 79.8349 76.1551
RIIIS/J both 70.75 0.9371 72.5899 68.9101
SEA/GnJ both 75.68 0.9371 77.5199 73.8401
SJL/J both 76.545 0.9371 78.3849 74.7051
SM/J both 77.675 0.9371 79.5149 75.8351
SPRET/EiJ both 73.2578 1.1688 75.5525 70.9631
SWR/J both 82.6078 0.9628 84.4981 80.7175
WSB/EiJ both 81.97 0.9371 83.8099 80.1301




  GWAS USING LINEAR MIXED MODELS