Project measure / variable:   Tordoff3   total_calcium

ID, description, units MPD:10324   total_calcium   plasma total calcium   [mg/dL]  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 13-15wks
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  STRAIN COMPARISON PLOT
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Tordoff3 - plasma total calcium



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means9.49   mg/dL 9.38   mg/dL
Median of the strain means9.50   mg/dL 9.45   mg/dL
SD of the strain means± 0.315 ± 0.264
Coefficient of variation (CV)0.0332 0.0281
Min–max range of strain means8.73   –   10.0   mg/dL 8.85   –   9.96   mg/dL
Mean sample size per strain9.7   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.0818 2.0818 7.2609 0.0072
strain 39 58.1854 1.4919 5.2035 < 0.0001
sex:strain 39 10.688 0.2741 0.9558 0.549
Residuals 705 202.1344 0.2867


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.42 0.364   10 0.115 0.0386 8.68, 9.96 -0.21
129S1/SvImJ m 9.23 0.485   9 0.162 0.0526 8.44, 9.84 -0.59
A/J f 9.56 0.353   10 0.112 0.037 8.96, 10.2 0.23
A/J m 9.48 0.494   10 0.156 0.0521 8.48, 10.1 0.36
AKR/J f 9.22 1.39   9 0.464 0.151 6.44, 10.6 -0.85
AKR/J m 9.46 0.848   10 0.268 0.0896 7.84, 10.2 0.29
BALB/cByJ f 10.0 0.77   9 0.257 0.077 9.28, 11.7 1.63
BALB/cByJ m 9.63 0.453   10 0.143 0.0471 8.76, 10.2 0.93
BTBR T+ Itpr3tf/J f 9.04 0.516   9 0.172 0.0571 8.2, 9.84 -1.42
BTBR T+ Itpr3tf/J m 8.92 0.443   10 0.14 0.0497 8.04, 9.4 -1.76
BUB/BnJ f 9.66 0.325   10 0.103 0.0336 9.16, 10.2 0.55
BUB/BnJ m 9.48 0.319   9 0.106 0.0336 9.04, 9.96 0.36
C3H/HeJ f 9.89 0.344   10 0.109 0.0348 9.4, 10.6 1.28
C3H/HeJ m 9.45 0.558   10 0.177 0.0591 8.68, 10.2 0.25
C57BL/10J f 9.58 0.355   10 0.112 0.0371 9.08, 10.3 0.29
C57BL/10J m 9.35 0.771   10 0.244 0.0824 8.2, 10.6 -0.13
C57BL/6J f 9.49 0.278   9 0.0926 0.0293 9.08, 9.92 0.01
C57BL/6J m 9.46 0.228   9 0.076 0.0241 9.16, 9.8 0.29
C57BLKS/J f 9.38 0.304   10 0.0962 0.0324 9.08, 10.0 -0.34
C57BLKS/J m 9.12 0.401   8 0.142 0.044 8.4, 9.64 -1.0
C57BR/cdJ f 8.73 1.17   15 0.301 0.134 5.2, 9.92 -2.41
C57BR/cdJ m 9.09 0.338   13 0.0938 0.0372 8.6, 9.64 -1.12
C57L/J f 8.84 0.861   10 0.272 0.0974 7.28, 9.68 -2.06
C57L/J m 8.94 0.95   10 0.3 0.106 6.44, 9.84 -1.69
C58/J f 9.45 0.587   9 0.196 0.0621 8.24, 10.4 -0.12
C58/J m 9.49 0.421   9 0.14 0.0443 8.8, 10.1 0.4
CAST/EiJ f 9.21 0.517   10 0.164 0.0562 8.44, 10.1 -0.88
CAST/EiJ m 9.52 0.664   10 0.21 0.0698 8.44, 10.5 0.52
CBA/J f 9.45 0.306   10 0.0968 0.0324 8.96, 9.88 -0.12
CBA/J m 9.22 0.13   10 0.041 0.0141 9.04, 9.48 -0.62
CE/J f 9.78 0.497   9 0.166 0.0508 9.16, 10.6 0.93
CE/J m 9.37 0.422   8 0.149 0.045 8.76, 10.2 -0.05
CZECHII/EiJ f 9.56 0.237   9 0.079 0.0248 9.2, 9.92 0.23
CZECHII/EiJ m 9.65 0.638   10 0.202 0.0661 8.6, 10.8 1.01
DBA/2J f 9.7 0.341   10 0.108 0.0352 9.2, 10.3 0.67
DBA/2J m 9.53 0.527   10 0.167 0.0553 8.48, 10.4 0.55
FVB/NJ f 9.35 0.462   10 0.146 0.0495 8.84, 10.0 -0.44
FVB/NJ m 9.18 0.431   10 0.136 0.0469 8.48, 9.68 -0.78
I/LnJ f 8.94 0.306   10 0.0967 0.0342 8.32, 9.32 -1.74
I/LnJ m 8.85 0.408   10 0.129 0.0461 8.0, 9.28 -2.03
JF1/MsJ f 9.22 0.562   9 0.187 0.061 8.52, 10.3 -0.85
JF1/MsJ m 8.99 0.537   10 0.17 0.0597 8.56, 10.4 -1.5
KK/HlJ f 9.79 0.57   10 0.18 0.0582 8.72, 10.8 0.96
KK/HlJ m 9.49 0.625   10 0.198 0.0658 8.72, 10.5 0.4
LP/J f 9.26 0.41   10 0.13 0.0443 8.56, 10.0 -0.72
LP/J m 9.44 0.462   10 0.146 0.049 8.8, 10.2 0.21
MA/MyJ f 9.37 0.6   8 0.212 0.0641 8.24, 10.2 -0.37
MA/MyJ m 8.89 0.434   15 0.112 0.0488 8.12, 9.56 -1.88
MOLF/EiJ f 10.0 0.498   9 0.166 0.0497 9.36, 10.7 1.63
MOLF/EiJ m 9.87 0.521   10 0.165 0.0528 9.12, 10.8 1.84
MSM/MsJ f 9.22 0.275   10 0.0871 0.0299 8.64, 9.6 -0.85
MSM/MsJ m 9.28 0.491   10 0.155 0.0529 8.6, 10.2 -0.4
NOD/ShiLtJ f 9.54 0.582   9 0.194 0.0611 8.28, 10.3 0.17
NOD/ShiLtJ m 9.54 0.443   10 0.14 0.0464 8.56, 10.0 0.59
NON/ShiLtJ f 9.91 0.532   10 0.168 0.0537 9.16, 10.7 1.34
NON/ShiLtJ m 9.96 0.612   10 0.193 0.0614 9.12, 11.0 2.18
NZB/BlNJ f 9.89 0.295   10 0.0934 0.0299 9.44, 10.4 1.28
NZB/BlNJ m 9.42 0.675   10 0.214 0.0717 7.84, 10.1 0.14
NZW/LacJ f 9.67 0.391   10 0.124 0.0404 8.8, 10.2 0.58
NZW/LacJ m 9.57 0.21   10 0.0664 0.0219 9.28, 10.0 0.7
PERA/EiJ f 9.95 0.849   10 0.268 0.0853 9.0, 12.0 1.47
PERA/EiJ m 9.42 0.667   10 0.211 0.0708 8.4, 10.5 0.14
PL/J f 9.63 0.334   10 0.106 0.0347 9.08, 10.1 0.45
PL/J m 9.68 0.277   10 0.0875 0.0286 9.32, 10.2 1.12
PWK/PhJ f 9.33 0.613   10 0.194 0.0657 8.52, 10.6 -0.5
PWK/PhJ m 9.24 0.326   10 0.103 0.0353 8.56, 9.8 -0.55
RIIIS/J f 9.43 0.384   10 0.121 0.0407 8.52, 9.8 -0.18
RIIIS/J m 9.68 0.238   10 0.0753 0.0246 9.28, 10.0 1.12
SEA/GnJ f 9.5 0.192   10 0.0609 0.0203 9.16, 9.84 0.04
SEA/GnJ m 9.58 0.322   10 0.102 0.0337 9.04, 10.0 0.74
SJL/J f 9.62 0.606   10 0.192 0.063 8.44, 10.4 0.42
SJL/J m 9.65 0.632   10 0.2 0.0655 8.72, 10.4 1.01
SM/J f 9.18 0.279   10 0.0881 0.0303 8.8, 9.64 -0.98
SM/J m 9.28 0.21   10 0.0665 0.0227 8.96, 9.68 -0.4
SPRET/EiJ f 9.65 0.542   9 0.181 0.0562 8.64, 10.2 0.52
SPRET/EiJ m 9.62 1.09   5 0.487 0.113 7.8, 10.6 0.89
SWR/J f 9.89 0.511   10 0.162 0.0517 8.92, 10.4 1.28
SWR/J m 9.3 0.44   8 0.156 0.0473 8.48, 9.8 -0.32
WSB/EiJ f 9.2 0.378   10 0.119 0.0411 8.36, 9.56 -0.91
WSB/EiJ m 9.05 0.222   10 0.0701 0.0245 8.68, 9.32 -1.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.424 0.1693 9.7564 9.0916
129S1/SvImJ m 9.2267 0.1785 9.5771 8.8762
A/J f 9.556 0.1693 9.8884 9.2236
A/J m 9.478 0.1693 9.8104 9.1456
AKR/J f 9.22 0.1785 9.5704 8.8696
AKR/J m 9.462 0.1693 9.7944 9.1296
BALB/cByJ f 9.9978 0.1785 10.3482 9.6473
BALB/cByJ m 9.626 0.1693 9.9584 9.2936
BTBR T+ Itpr3tf/J f 9.0356 0.1785 9.386 8.6851
BTBR T+ Itpr3tf/J m 8.92 0.1693 9.2524 8.5876
BUB/BnJ f 9.664 0.1693 9.9964 9.3316
BUB/BnJ m 9.48 0.1785 9.8304 9.1296
C3H/HeJ f 9.894 0.1693 10.2264 9.5616
C3H/HeJ m 9.448 0.1693 9.7804 9.1156
C57BL/10J f 9.582 0.1693 9.9144 9.2496
C57BL/10J m 9.352 0.1693 9.6844 9.0196
C57BL/6J f 9.4933 0.1785 9.8438 9.1429
C57BL/6J m 9.4578 0.1785 9.8082 9.1073
C57BLKS/J f 9.384 0.1693 9.7164 9.0516
C57BLKS/J m 9.12 0.1893 9.4917 8.7483
C57BR/cdJ f 8.7253 0.1383 8.9968 8.4539
C57BR/cdJ m 9.0862 0.1485 9.3777 8.7946
C57L/J f 8.84 0.1693 9.1724 8.5076
C57L/J m 8.94 0.1693 9.2724 8.6076
C58/J f 9.4533 0.1785 9.8038 9.1029
C58/J m 9.4911 0.1785 9.8415 9.1407
CAST/EiJ f 9.206 0.1693 9.5384 8.8736
CAST/EiJ m 9.522 0.1693 9.8544 9.1896
CBA/J f 9.448 0.1693 9.7804 9.1156
CBA/J m 9.216 0.1693 9.5484 8.8836
CE/J f 9.7756 0.1785 10.126 9.4251
CE/J m 9.37 0.1893 9.7417 8.9983
CZECHII/EiJ f 9.5556 0.1785 9.906 9.2051
CZECHII/EiJ m 9.652 0.1693 9.9844 9.3196
DBA/2J f 9.7 0.1693 10.0324 9.3676
DBA/2J m 9.528 0.1693 9.8604 9.1956
FVB/NJ f 9.348 0.1693 9.6804 9.0156
FVB/NJ m 9.184 0.1693 9.5164 8.8516
I/LnJ f 8.936 0.1693 9.2684 8.6036
I/LnJ m 8.852 0.1693 9.1844 8.5196
JF1/MsJ f 9.2156 0.1785 9.566 8.8651
JF1/MsJ m 8.992 0.1693 9.3244 8.6596
KK/HlJ f 9.786 0.1693 10.1184 9.4536
KK/HlJ m 9.494 0.1693 9.8264 9.1616
LP/J f 9.26 0.1693 9.5924 8.9276
LP/J m 9.436 0.1693 9.7684 9.1036
MA/MyJ f 9.37 0.1893 9.7417 8.9983
MA/MyJ m 8.8933 0.1383 9.1648 8.6219
MOLF/EiJ f 10.0311 0.1785 10.3815 9.6807
MOLF/EiJ m 9.868 0.1693 10.2004 9.5356
MSM/MsJ f 9.22 0.1693 9.5524 8.8876
MSM/MsJ m 9.28 0.1693 9.6124 8.9476
NOD/ShiLtJ f 9.5356 0.1785 9.886 9.1851
NOD/ShiLtJ m 9.544 0.1693 9.8764 9.2116
NON/ShiLtJ f 9.906 0.1693 10.2384 9.5736
NON/ShiLtJ m 9.96 0.1693 10.2924 9.6276
NZB/BlNJ f 9.89 0.1693 10.2224 9.5576
NZB/BlNJ m 9.418 0.1693 9.7504 9.0856
NZW/LacJ f 9.672 0.1693 10.0044 9.3396
NZW/LacJ m 9.572 0.1693 9.9044 9.2396
PERA/EiJ f 9.948 0.1693 10.2804 9.6156
PERA/EiJ m 9.416 0.1693 9.7484 9.0836
PL/J f 9.634 0.1693 9.9664 9.3016
PL/J m 9.682 0.1693 10.0144 9.3496
PWK/PhJ f 9.332 0.1693 9.6644 8.9996
PWK/PhJ m 9.236 0.1693 9.5684 8.9036
RIIIS/J f 9.432 0.1693 9.7644 9.0996
RIIIS/J m 9.676 0.1693 10.0084 9.3436
SEA/GnJ f 9.504 0.1693 9.8364 9.1716
SEA/GnJ m 9.576 0.1693 9.9084 9.2436
SJL/J f 9.618 0.1693 9.9504 9.2856
SJL/J m 9.654 0.1693 9.9864 9.3216
SM/J f 9.184 0.1693 9.5164 8.8516
SM/J m 9.284 0.1693 9.6164 8.9516
SPRET/EiJ f 9.6533 0.1785 10.0038 9.3029
SPRET/EiJ m 9.62 0.2395 10.0901 9.1499
SWR/J f 9.886 0.1693 10.2184 9.5536
SWR/J m 9.3 0.1893 9.6717 8.9283
WSB/EiJ f 9.196 0.1693 9.5284 8.8636
WSB/EiJ m 9.052 0.1693 9.3844 8.7196


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.3253 0.123 9.5668 9.0838
A/J both 9.517 0.1197 9.7521 9.2819
AKR/J both 9.341 0.123 9.5825 9.0995
BALB/cByJ both 9.8119 0.123 10.0534 9.5704
BTBR T+ Itpr3tf/J both 8.9778 0.123 9.2193 8.7363
BUB/BnJ both 9.572 0.123 9.8135 9.3305
C3H/HeJ both 9.671 0.1197 9.9061 9.4359
C57BL/10J both 9.467 0.1197 9.7021 9.2319
C57BL/6J both 9.4756 0.1262 9.7233 9.2278
C57BLKS/J both 9.252 0.127 9.5013 9.0027
C57BR/cdJ both 8.9057 0.1015 9.1049 8.7066
C57L/J both 8.89 0.1197 9.1251 8.6549
C58/J both 9.4722 0.1262 9.72 9.2244
CAST/EiJ both 9.364 0.1197 9.5991 9.1289
CBA/J both 9.332 0.1197 9.5671 9.0969
CE/J both 9.5728 0.1301 9.8282 9.3174
CZECHII/EiJ both 9.6038 0.123 9.8453 9.3623
DBA/2J both 9.614 0.1197 9.8491 9.3789
FVB/NJ both 9.266 0.1197 9.5011 9.0309
I/LnJ both 8.894 0.1197 9.1291 8.6589
JF1/MsJ both 9.1038 0.123 9.3453 8.8623
KK/HlJ both 9.64 0.1197 9.8751 9.4049
LP/J both 9.348 0.1197 9.5831 9.1129
MA/MyJ both 9.1317 0.1172 9.3618 8.9015
MOLF/EiJ both 9.9496 0.123 10.1911 9.708
MSM/MsJ both 9.25 0.1197 9.4851 9.0149
NOD/ShiLtJ both 9.5398 0.123 9.7813 9.2983
NON/ShiLtJ both 9.933 0.1197 10.1681 9.6979
NZB/BlNJ both 9.654 0.1197 9.8891 9.4189
NZW/LacJ both 9.622 0.1197 9.8571 9.3869
PERA/EiJ both 9.682 0.1197 9.9171 9.4469
PL/J both 9.658 0.1197 9.8931 9.4229
PWK/PhJ both 9.284 0.1197 9.5191 9.0489
RIIIS/J both 9.554 0.1197 9.7891 9.3189
SEA/GnJ both 9.54 0.1197 9.7751 9.3049
SJL/J both 9.636 0.1197 9.8711 9.4009
SM/J both 9.234 0.1197 9.4691 8.9989
SPRET/EiJ both 9.6367 0.1493 9.9299 9.3435
SWR/J both 9.593 0.127 9.8423 9.3437
WSB/EiJ both 9.124 0.1197 9.3591 8.8889




  GWAS USING LINEAR MIXED MODELS