Project measure / variable:   Tordoff3   CaCl2_pref75

ID, description, units MPD:10310   CaCl2_pref75   preference for CaCl2 (calcium chloride) solutions   [%]  concentration 75 mM  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 9-11wks
Procedure bottle choice test
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  STRAIN COMPARISON PLOT
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Tordoff3 - preference for CaCl2 (calcium chloride) solutions concentration 75 mM



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means21.8   % 20.5   %
Median of the strain means20.9   % 16.1   %
SD of the strain means± 12.8 ± 15.2
Coefficient of variation (CV)0.586 0.744
Min–max range of strain means3.45   –   57.4   % 4.11   –   73.4   %
Mean sample size per strain9.8   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 321.6479 321.6479 2.3256 0.1277
strain 39 143875.6207 3689.1185 26.6735 < 0.0001
sex:strain 39 9443.0314 242.129 1.7507 0.0036
Residuals 710 98197.5765 138.3064


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 30.2 13.9   10 4.39 0.459 5.6, 52.5 0.66
129S1/SvImJ m 32.7 26.3   9 8.75 0.803 10.7, 90.6 0.8
A/J f 20.9 8.45   10 2.67 0.404 9.0, 35.3 -0.07
A/J m 17.8 8.93   10 2.82 0.501 7.3, 35.6 -0.17
AKR/J f 12.9 9.1   9 3.03 0.707 2.9, 32.9 -0.7
AKR/J m 16.8 10.1   10 3.19 0.602 6.9, 37.2 -0.24
BALB/cByJ f 33.3 19.1   9 6.36 0.573 10.9, 74.0 0.9
BALB/cByJ m 19.1 10.7   10 3.37 0.558 5.3, 39.5 -0.09
BTBR T+ Itpr3tf/J f 52.6 17.1   10 5.41 0.325 26.0, 80.8 2.42
BTBR T+ Itpr3tf/J m 66.3 18.6   10 5.87 0.28 32.7, 93.9 3.01
BUB/BnJ f 26.0 11.1   10 3.5 0.425 8.5, 44.0 0.33
BUB/BnJ m 14.5 9.11   9 3.04 0.627 3.1, 25.6 -0.39
C3H/HeJ f 24.8 11.4   10 3.62 0.462 10.9, 46.2 0.24
C3H/HeJ m 21.9 11.9   10 3.76 0.544 11.3, 40.0 0.1
C57BL/10J f 11.1 6.05   10 1.91 0.546 5.8, 26.2 -0.84
C57BL/10J m 8.71 2.11   10 0.669 0.243 5.6, 11.5 -0.77
C57BL/6J f 11.3 4.48   9 1.49 0.395 6.9, 20.5 -0.82
C57BL/6J m 12.3 7.94   9 2.65 0.647 3.9, 24.7 -0.54
C57BLKS/J f 27.9 12.2   10 3.87 0.439 10.6, 47.8 0.48
C57BLKS/J m 27.6 15.0   8 5.3 0.544 12.2, 53.6 0.47
C57BR/cdJ f 6.87 4.44   15 1.15 0.646 2.2, 16.9 -1.17
C57BR/cdJ m 7.41 4.7   13 1.3 0.634 1.7, 16.3 -0.86
C57L/J f 25.4 14.4   10 4.57 0.569 8.7, 46.3 0.28
C57L/J m 21.7 9.91   10 3.13 0.456 7.1, 39.4 0.08
C58/J f 3.71 2.83   9 0.942 0.762 1.6, 10.8 -1.42
C58/J m 6.37 2.53   9 0.843 0.397 3.5, 10.1 -0.93
CAST/EiJ f 21.1 7.27   11 2.19 0.345 10.3, 36.2 -0.05
CAST/EiJ m 23.0 11.4   10 3.61 0.497 8.0, 48.1 0.17
CBA/J f 19.7 10.2   10 3.24 0.519 8.1, 39.2 -0.16
CBA/J m 12.4 3.44   10 1.09 0.277 8.1, 17.7 -0.53
CE/J f 7.39 4.78   9 1.59 0.646 2.2, 14.3 -1.13
CE/J m 10.1 3.56   8 1.26 0.353 4.9, 16.9 -0.68
CZECHII/EiJ f 16.7 12.6   9 4.19 0.752 8.5, 49.0 -0.4
CZECHII/EiJ m 28.3 17.2   10 5.44 0.608 8.3, 48.5 0.52
DBA/2J f 19.6 9.16   10 2.9 0.469 8.0, 32.0 -0.17
DBA/2J m 22.0 12.1   10 3.81 0.548 2.6, 41.4 0.1
FVB/NJ f 26.4 16.4   10 5.19 0.623 7.0, 57.7 0.36
FVB/NJ m 12.9 2.57   10 0.811 0.199 7.7, 15.6 -0.5
I/LnJ f 12.2 2.44   10 0.772 0.201 9.1, 15.1 -0.75
I/LnJ m 11.7 3.63   10 1.15 0.311 6.7, 18.8 -0.57
JF1/MsJ f 57.4 13.0   10 4.1 0.226 43.2, 74.4 2.79
JF1/MsJ m 57.6 14.5   10 4.6 0.252 33.3, 81.6 2.44
KK/HlJ f 3.45 1.28   10 0.403 0.37 1.4, 5.4 -1.44
KK/HlJ m 4.11 3.34   10 1.06 0.813 0.8, 11.7 -1.07
LP/J f 25.5 20.8   10 6.57 0.813 5.0, 72.6 0.29
LP/J m 15.3 8.85   10 2.8 0.578 5.3, 32.8 -0.34
MA/MyJ f 13.5 10.9   8 3.85 0.809 2.2, 29.1 -0.65
MA/MyJ m 13.5 13.1   15 3.38 0.971 2.2, 49.4 -0.46
MOLF/EiJ f 20.2 11.3   9 3.78 0.561 7.6, 38.7 -0.12
MOLF/EiJ m 21.8 11.7   10 3.69 0.534 6.9, 41.8 0.09
MSM/MsJ f 29.4 12.5   10 3.97 0.427 8.2, 54.0 0.6
MSM/MsJ m 39.3 15.7   10 4.97 0.4 7.3, 63.8 1.24
NOD/ShiLtJ f 9.05 3.96   10 1.25 0.438 5.1, 18.6 -1.0
NOD/ShiLtJ m 10.7 3.31   10 1.05 0.308 6.8, 18.9 -0.64
NON/ShiLtJ f 26.2 26.4   10 8.35 1.01 8.8, 98.5 0.35
NON/ShiLtJ m 19.9 10.8   10 3.42 0.542 4.5, 43.2 -0.04
NZB/BlNJ f 35.8 10.5   10 3.31 0.293 16.7, 48.8 1.1
NZB/BlNJ m 30.4 8.83   10 2.79 0.29 16.9, 43.2 0.65
NZW/LacJ f 11.5 6.6   10 2.09 0.574 2.6, 20.0 -0.81
NZW/LacJ m 6.76 4.5   10 1.42 0.666 3.2, 16.7 -0.9
PERA/EiJ f 18.2 12.9   10 4.08 0.709 8.1, 51.0 -0.28
PERA/EiJ m 17.1 21.7   10 6.86 1.27 7.7, 78.7 -0.22
PL/J f 9.38 3.57   10 1.13 0.38 3.8, 15.4 -0.97
PL/J m 10.2 3.09   10 0.976 0.302 5.1, 13.6 -0.67
PWK/PhJ f 56.6 23.0   10 7.28 0.407 25.0, 90.9 2.73
PWK/PhJ m 73.4 11.5   10 3.64 0.157 49.2, 88.6 3.48
RIIIS/J f 32.4 13.1   10 4.14 0.404 9.5, 50.0 0.83
RIIIS/J m 21.7 16.3   10 5.16 0.752 8.9, 60.0 0.08
SEA/GnJ f 9.9 5.68   10 1.8 0.574 3.7, 19.5 -0.93
SEA/GnJ m 15.4 9.16   10 2.9 0.595 4.7, 37.5 -0.33
SJL/J f 22.6 9.88   10 3.12 0.436 10.3, 38.9 0.06
SJL/J m 14.6 6.73   10 2.13 0.462 8.0, 28.6 -0.38
SM/J f 21.0 11.1   10 3.52 0.53 5.0, 36.8 -0.06
SM/J m 10.9 12.1   10 3.83 1.12 3.4, 44.5 -0.63
SPRET/EiJ f 22.0 16.4   9 5.46 0.747 10.2, 51.1 0.02
SPRET/EiJ m 10.8 2.04   5 0.914 0.189 8.0, 13.7 -0.63
SWR/J f 15.7 8.28   10 2.62 0.526 5.9, 26.5 -0.48
SWR/J m 10.7 4.93   9 1.64 0.461 4.5, 20.0 -0.64
WSB/EiJ f 21.2 12.9   10 4.08 0.607 7.4, 45.6 -0.05
WSB/EiJ m 20.3 18.1   10 5.71 0.888 7.0, 55.6 -0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 30.24 3.719 37.5415 22.9385
129S1/SvImJ m 32.6778 3.9201 40.3742 24.9814
A/J f 20.91 3.719 28.2115 13.6085
A/J m 17.82 3.719 25.1215 10.5185
AKR/J f 12.8667 3.9201 20.5631 5.1702
AKR/J m 16.78 3.719 24.0815 9.4785
BALB/cByJ f 33.2889 3.9201 40.9853 25.5925
BALB/cByJ m 19.09 3.719 26.3915 11.7885
BTBR T+ Itpr3tf/J f 52.57 3.719 59.8715 45.2685
BTBR T+ Itpr3tf/J m 66.34 3.719 73.6415 59.0385
BUB/BnJ f 26.01 3.719 33.3115 18.7085
BUB/BnJ m 14.5444 3.9201 22.2409 6.848
C3H/HeJ f 24.76 3.719 32.0615 17.4585
C3H/HeJ m 21.89 3.719 29.1915 14.5885
C57BL/10J f 11.08 3.719 18.3815 3.7785
C57BL/10J m 8.71 3.719 16.0115 1.4085
C57BL/6J f 11.3444 3.9201 19.0409 3.648
C57BL/6J m 12.2667 3.9201 19.9631 4.5702
C57BLKS/J f 27.88 3.719 35.1815 20.5785
C57BLKS/J m 27.6 4.1579 35.7633 19.4367
C57BR/cdJ f 6.8733 3.0365 12.835 0.9117
C57BR/cdJ m 7.4077 3.2617 13.8115 1.0039
C57L/J f 25.4 3.719 32.7015 18.0985
C57L/J m 21.73 3.719 29.0315 14.4285
C58/J f 3.7111 3.9201 11.4075 0.0
C58/J m 6.3667 3.9201 14.0631 0.0
CAST/EiJ f 21.1091 3.5459 28.0708 14.1474
CAST/EiJ m 23.0 3.719 30.3015 15.6985
CBA/J f 19.73 3.719 27.0315 12.4285
CBA/J m 12.42 3.719 19.7215 5.1185
CE/J f 7.3889 3.9201 15.0853 0.0
CE/J m 10.0875 4.1579 18.2508 1.9242
CZECHII/EiJ f 16.7 3.9201 24.3964 9.0036
CZECHII/EiJ m 28.28 3.719 35.5815 20.9785
DBA/2J f 19.56 3.719 26.8615 12.2585
DBA/2J m 22.0 3.719 29.3015 14.6985
FVB/NJ f 26.36 3.719 33.6615 19.0585
FVB/NJ m 12.86 3.719 20.1615 5.5585
I/LnJ f 12.16 3.719 19.4615 4.8585
I/LnJ m 11.68 3.719 18.9815 4.3785
JF1/MsJ f 57.4 3.719 64.7015 50.0985
JF1/MsJ m 57.65 3.719 64.9515 50.3485
KK/HlJ f 3.45 3.719 10.7515 0.0
KK/HlJ m 4.11 3.719 11.4115 0.0
LP/J f 25.54 3.719 32.8415 18.2385
LP/J m 15.3 3.719 22.6015 7.9985
MA/MyJ f 13.4625 4.1579 21.6258 5.2992
MA/MyJ m 13.46 3.0365 19.4216 7.4984
MOLF/EiJ f 20.2222 3.9201 27.9186 12.5258
MOLF/EiJ m 21.83 3.719 29.1315 14.5285
MSM/MsJ f 29.36 3.719 36.6615 22.0585
MSM/MsJ m 39.29 3.719 46.5915 31.9885
NOD/ShiLtJ f 9.05 3.719 16.3515 1.7485
NOD/ShiLtJ m 10.74 3.719 18.0415 3.4385
NON/ShiLtJ f 26.21 3.719 33.5115 18.9085
NON/ShiLtJ m 19.94 3.719 27.2415 12.6385
NZB/BlNJ f 35.79 3.719 43.0915 28.4885
NZB/BlNJ m 30.39 3.719 37.6915 23.0885
NZW/LacJ f 11.49 3.719 18.7915 4.1885
NZW/LacJ m 6.76 3.719 14.0615 0.0
PERA/EiJ f 18.22 3.719 25.5215 10.9185
PERA/EiJ m 17.14 3.719 24.4415 9.8385
PL/J f 9.38 3.719 16.6815 2.0785
PL/J m 10.21 3.719 17.5115 2.9085
PWK/PhJ f 56.6 3.719 63.9015 49.2985
PWK/PhJ m 73.37 3.719 80.6715 66.0685
RIIIS/J f 32.42 3.719 39.7215 25.1185
RIIIS/J m 21.71 3.719 29.0115 14.4085
SEA/GnJ f 9.9 3.719 17.2015 2.5985
SEA/GnJ m 15.38 3.719 22.6815 8.0785
SJL/J f 22.64 3.719 29.9415 15.3385
SJL/J m 14.57 3.719 21.8715 7.2685
SM/J f 21.0 3.719 28.3015 13.6985
SM/J m 10.87 3.719 18.1715 3.5685
SPRET/EiJ f 21.9556 3.9201 29.652 14.2591
SPRET/EiJ m 10.8 5.2594 21.1258 0.4742
SWR/J f 15.73 3.719 23.0315 8.4285
SWR/J m 10.6889 3.9201 18.3853 2.9925
WSB/EiJ f 21.22 3.719 28.5215 13.9185
WSB/EiJ m 20.34 3.719 27.6415 13.0385


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 31.4589 2.7018 36.7633 26.1545
A/J both 19.365 2.6297 24.5279 14.2021
AKR/J both 14.8233 2.7018 20.1277 9.5189
BALB/cByJ both 26.1894 2.7018 31.4938 20.885
BTBR T+ Itpr3tf/J both 59.455 2.6297 64.6179 54.2921
BUB/BnJ both 20.2772 2.7018 25.5816 14.9728
C3H/HeJ both 23.325 2.6297 28.4879 18.1621
C57BL/10J both 9.895 2.6297 15.0579 4.7321
C57BL/6J both 11.8056 2.7719 17.2477 6.3634
C57BLKS/J both 27.74 2.7892 33.2161 22.2639
C57BR/cdJ both 7.1405 2.2282 11.5151 2.7659
C57L/J both 23.565 2.6297 28.7279 18.4021
C58/J both 5.0389 2.7719 10.4811 0.0
CAST/EiJ both 22.0545 2.5692 27.0988 17.0103
CBA/J both 16.075 2.6297 21.2379 10.9121
CE/J both 8.7382 2.8573 14.3479 3.1285
CZECHII/EiJ both 22.49 2.7018 27.7944 17.1856
DBA/2J both 20.78 2.6297 25.9429 15.6171
FVB/NJ both 19.61 2.6297 24.7729 14.4471
I/LnJ both 11.92 2.6297 17.0829 6.7571
JF1/MsJ both 57.525 2.6297 62.6879 52.3621
KK/HlJ both 3.78 2.6297 8.9429 0.0
LP/J both 20.42 2.6297 25.5829 15.2571
MA/MyJ both 13.4612 2.5743 18.5155 8.407
MOLF/EiJ both 21.0261 2.7018 26.3305 15.7217
MSM/MsJ both 34.325 2.6297 39.4879 29.1621
NOD/ShiLtJ both 9.895 2.6297 15.0579 4.7321
NON/ShiLtJ both 23.075 2.6297 28.2379 17.9121
NZB/BlNJ both 33.09 2.6297 38.2529 27.9271
NZW/LacJ both 9.125 2.6297 14.2879 3.9621
PERA/EiJ both 17.68 2.6297 22.8429 12.5171
PL/J both 9.795 2.6297 14.9579 4.6321
PWK/PhJ both 64.985 2.6297 70.1479 59.8221
RIIIS/J both 27.065 2.6297 32.2279 21.9021
SEA/GnJ both 12.64 2.6297 17.8029 7.4771
SJL/J both 18.605 2.6297 23.7679 13.4421
SM/J both 15.935 2.6297 21.0979 10.7721
SPRET/EiJ both 16.3778 3.2798 22.8171 9.9385
SWR/J both 13.2094 2.7018 18.5138 7.905
WSB/EiJ both 20.78 2.6297 25.9429 15.6171




  GWAS USING LINEAR MIXED MODELS