Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:49962290-53190319

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aggr2 X 49982290 to 53170319 3188029 QTL aggression 2
DXMit105 X 49982290 to 49982436 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 105
Olfr1323 X 50009306 to 50010235 929 - protein coding gene olfactory receptor 1323
Gm23385 X 50022621 to 50022915 294 + unclassified non-coding RNA gene predicted gene, 23385
Gm7803 X 50325518 to 50326532 1014 - pseudogene predicted gene 7803
DXMit225 X 50329245 to 50329335 90 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 225
DXMit225.2 X 50329391 to 50329509 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 225.2
Gm14612 X 50373154 to 50374029 875 + pseudogene predicted gene 14612
Cpgi22709 X 50373806 to 50374025 219 CpG island CpG island 22709
Gm22288 X 50405813 to 50405919 106 + snRNA gene predicted gene, 22288
Olfr1324 X 50425496 to 50426494 998 - protein coding gene olfactory receptor 1324
Tssr160930 X 50537331 to 50537372 41 + TSS region transcription start site region 160930
Gm35612 X 50537389 to 50562598 25209 + lncRNA gene predicted gene, 35612
Gm14620 X 50542402 to 50542784 382 - pseudogene predicted gene 14620
Firre X 50563120 to 50635321 72201 - lncRNA gene functional intergenic repeating RNA element
Tssr163313 X 50585487 to 50585491 4 - TSS region transcription start site region 163313
Tssr163314 X 50635247 to 50635272 25 - TSS region transcription start site region 163314
Tssr163315 X 50635283 to 50635328 45 - TSS region transcription start site region 163315
Tssr160931 X 50827558 to 50827585 27 + TSS region transcription start site region 160931
Stk26 X 50841174 to 50893103 51929 + protein coding gene serine/threonine kinase 26
Cpgi22710 X 50841197 to 50842000 803 CpG island CpG island 22710
Tssr160932 X 50841389 to 50841421 32 + TSS region transcription start site region 160932
Tssr160933 X 50841434 to 50841449 15 + TSS region transcription start site region 160933
DXMit192 X 50876243 to 50876365 122 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 192
Frmd7 X 50895180 to 50942710 47530 - protein coding gene FERM domain containing 7
DXMit83 X 50924915 to 50925064 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 83
Tssr163316 X 50942739 to 50942758 19 - TSS region transcription start site region 163316
Tssr163317 X 50942762 to 50942773 11 - TSS region transcription start site region 163317
Tssr163318 X 50942802 to 50942809 7 - TSS region transcription start site region 163318
Tssr163319 X 50943603 to 50943622 19 - TSS region transcription start site region 163319
Rap2c X 51003912 to 51018018 14106 - protein coding gene RAP2C, member of RAS oncogene family
Cpgi22711 X 51017883 to 51019077 1194 CpG island CpG island 22711
Tssr163320 X 51017908 to 51017923 15 - TSS region transcription start site region 163320
Tssr163321 X 51017924 to 51017939 15 - TSS region transcription start site region 163321
Tssr163322 X 51017967 to 51018009 42 - TSS region transcription start site region 163322
Tssr163323 X 51018011 to 51018032 21 - TSS region transcription start site region 163323
Tssr163324 X 51018040 to 51018064 24 - TSS region transcription start site region 163324
Tssr163325 X 51018609 to 51018683 74 - TSS region transcription start site region 163325
Tssr163326 X 51018717 to 51018746 29 - TSS region transcription start site region 163326
Tssr163327 X 51020043 to 51020077 34 - TSS region transcription start site region 163327
Tssr160934 X 51020870 to 51020880 10 + TSS region transcription start site region 160934
Gm5387 X 51043963 to 51044819 856 + pseudogene predicted gene 5387
MHAa97h7 X 51086637 to 51086793 156 DNA segment DNA segment, MHAa97h7
Tssr163328 X 51115943 to 51115965 22 - TSS region transcription start site region 163328
Tssr163329 X 51116104 to 51116107 3 - TSS region transcription start site region 163329
Mbnl3 X 51117269 to 51206532 89263 - protein coding gene muscleblind like splicing factor 3
Tssr163330 X 51130165 to 51130198 33 - TSS region transcription start site region 163330
Tssr163331 X 51146414 to 51146416 2 - TSS region transcription start site region 163331
Cpgi22712 X 51204698 to 51206257 1559 CpG island CpG island 22712
Tssr163332 X 51204775 to 51204788 13 - TSS region transcription start site region 163332
Tssr163333 X 51205616 to 51205638 22 - TSS region transcription start site region 163333
Tssr163334 X 51205640 to 51205671 31 - TSS region transcription start site region 163334
Tssr163335 X 51205773 to 51205839 66 - TSS region transcription start site region 163335
Tssr163336 X 51205852 to 51205874 22 - TSS region transcription start site region 163336
Tssr163337 X 51205878 to 51205900 22 - TSS region transcription start site region 163337
Tssr163338 X 51205902 to 51205931 29 - TSS region transcription start site region 163338
Tssr163339 X 51206017 to 51206033 16 - TSS region transcription start site region 163339
Gm7834 X 51212511 to 51212947 436 - pseudogene predicted gene 7834
Gm5388 X 51218877 to 51219993 1116 - pseudogene predicted gene 5388
Gm23417 X 51219110 to 51219192 82 - miRNA gene predicted gene, 23417
Tssr163340 X 51220067 to 51220074 7 - TSS region transcription start site region 163340
Gm14621 X 51238844 to 51239532 688 - pseudogene predicted gene 14621
Hs6st2 X 51387212 to 51681856 294644 - protein coding gene heparan sulfate 6-O-sulfotransferase 2
Tssr163341 X 51450258 to 51450261 3 - TSS region transcription start site region 163341
DXMit106 X 51613679 to 51613763 84 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 106
Gm14581 X 51629490 to 51629687 197 - pseudogene predicted gene 14581
Cpgi22713 X 51679888 to 51681568 1680 CpG island CpG island 22713
Tssr163342 X 51681251 to 51681263 12 - TSS region transcription start site region 163342
Tssr163343 X 51681333 to 51681365 32 - TSS region transcription start site region 163343
Tssr163344 X 51681366 to 51681394 28 - TSS region transcription start site region 163344
Tssr163345 X 51681450 to 51681461 11 - TSS region transcription start site region 163345
Gm35727 X 51681824 to 51864066 182242 + lncRNA gene predicted gene, 35727
2900011F02Rik X 51682088 to 51683754 1666 unclassified gene RIKEN cDNA 2900011F02 gene
DXMit166 X 51683498 to 51683611 113 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 166
Obq6 X 51683498 to 71391145 19707647 QTL obesity QTL 6
Usp26 X 51753959 to 51801233 47274 - protein coding gene ubiquitin specific peptidase 26
Tssr160935 X 51792098 to 51792104 6 + TSS region transcription start site region 160935
Tssr163346 X 51801078 to 51801083 5 - TSS region transcription start site region 163346
Gm7840 X 51840083 to 51840615 532 - pseudogene predicted gene 7840
Tssr163347 X 51840614 to 51840617 3 - TSS region transcription start site region 163347
Gm22539 X 51844685 to 51844801 116 + snoRNA gene predicted gene, 22539
1700080O16Rik X 51968695 to 51972772 4077 - protein coding gene RIKEN cDNA 1700080O16 gene
Tssr163348 X 51972771 to 51972798 27 - TSS region transcription start site region 163348
Gm35790 X 51972854 to 51974700 1846 + lncRNA gene predicted gene, 35790
Tssr163349 X 52052282 to 52052287 5 - TSS region transcription start site region 163349
Tssr163350 X 52052517 to 52052532 15 - TSS region transcription start site region 163350
Gpc4 X 52053021 to 52165252 112231 - protein coding gene glypican 4
Tssr163351 X 52053101 to 52053125 24 - TSS region transcription start site region 163351
Tssr163352 X 52053156 to 52053167 11 - TSS region transcription start site region 163352
Tssr163353 X 52053444 to 52053448 4 - TSS region transcription start site region 163353
Cpgi22714 X 52164263 to 52165565 1302 CpG island CpG island 22714
Tssr163354 X 52165269 to 52165280 11 - TSS region transcription start site region 163354
Tssr163355 X 52165312 to 52165335 23 - TSS region transcription start site region 163355
Tssr163356 X 52165345 to 52165362 17 - TSS region transcription start site region 163356
Gpc3 X 52272426 to 52613950 341524 - protein coding gene glypican 3
Tssr163357 X 52272672 to 52272694 22 - TSS region transcription start site region 163357
Gm14582 X 52296181 to 52333679 37498 + antisense lncRNA gene predicted gene 14582
Tssr163358 X 52310107 to 52310111 4 - TSS region transcription start site region 163358
D230050J18Rik X 52350174 to 52351809 1635 unclassified gene RIKEN cDNA D230050J18 gene
Mir6384 X 52378121 to 52378181 60 - miRNA gene microRNA 6384
Tssr163359 X 52397186 to 52397201 15 - TSS region transcription start site region 163359
Mir717 X 52422407 to 52422515 108 - miRNA gene microRNA 717
DXJti1 X 52424230 to 52424330 100 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 1
Tssr163360 X 52428836 to 52428851 15 - TSS region transcription start site region 163360
Tssr163361 X 52541994 to 52541999 5 - TSS region transcription start site region 163361
Tssr163362 X 52543191 to 52543195 4 - TSS region transcription start site region 163362
Tssr163363 X 52548758 to 52548763 5 - TSS region transcription start site region 163363
Tssr163364 X 52569119 to 52569121 2 - TSS region transcription start site region 163364
A630012P03Rik X 52575843 to 52619047 43204 + antisense lncRNA gene RIKEN cDNA A630012P03 gene
Tssr163365 X 52578138 to 52578142 4 - TSS region transcription start site region 163365
Tssr163366 X 52582921 to 52582951 30 - TSS region transcription start site region 163366
Cpgi22715 X 52613372 to 52614435 1063 CpG island CpG island 22715
Tssr163367 X 52613897 to 52613910 13 - TSS region transcription start site region 163367
Tssr163368 X 52613913 to 52613924 11 - TSS region transcription start site region 163368
Tssr163369 X 52613936 to 52613979 43 - TSS region transcription start site region 163369
Tssr163370 X 52614217 to 52614228 11 - TSS region transcription start site region 163370
Tssr163371 X 52614239 to 52614260 21 - TSS region transcription start site region 163371
Mir363 X 52741693 to 52741767 74 - miRNA gene microRNA 363
Mirc2 X 52741693 to 52742567 874 complex/cluster/region microRNA cluster 2, including Mir363 through Mir106a
Mir92-2 X 52741838 to 52741928 90 - miRNA gene microRNA 92-2
Mir19b-2 X 52741983 to 52742066 83 - miRNA gene microRNA 19b-2
Mir20b X 52742113 to 52742192 79 - miRNA gene microRNA 20b
Mir18b X 52742331 to 52742413 82 - miRNA gene microRNA 18b
Mir106a X 52742503 to 52742567 64 - miRNA gene microRNA 106a
Kis2 X 52742563 to 52744593 2030 - lncRNA gene Kaplan integration site 2
Tssr163372 X 52743891 to 52743918 27 - TSS region transcription start site region 163372
Cpgi22716 X 52744247 to 52744660 413 CpG island CpG island 22716
Tssr163373 X 52744583 to 52744598 15 - TSS region transcription start site region 163373
Tssr160936 X 52760425 to 52760434 9 + TSS region transcription start site region 160936
Gm42407 X 52760995 to 52763973 2978 + lncRNA gene predicted gene, 42407
Gm14586 X 52772342 to 52772749 407 - pseudogene predicted gene 14586
Tssr163374 X 52772763 to 52772774 11 - TSS region transcription start site region 163374
Gm7851 X 52782694 to 52783016 322 - pseudogene predicted gene 7851
Tssr160937 X 52788286 to 52788296 10 + TSS region transcription start site region 160937
Tssr160938 X 52788316 to 52788319 3 + TSS region transcription start site region 160938
Tssr160939 X 52788336 to 52788348 12 + TSS region transcription start site region 160939
Tssr160940 X 52791078 to 52791099 21 + TSS region transcription start site region 160940
Tssr160941 X 52791160 to 52791173 13 + TSS region transcription start site region 160941
Tssr160942 X 52791179 to 52791201 22 + TSS region transcription start site region 160942
Ccdc160 X 52791200 to 52799468 8268 + protein coding gene coiled-coil domain containing 160
Tssr160943 X 52791204 to 52791231 27 + TSS region transcription start site region 160943
Tssr160944 X 52793041 to 52793076 35 + TSS region transcription start site region 160944
Gm14607 X 52878239 to 52878726 487 + pseudogene predicted gene 14607
Gm6539 X 52879315 to 52880255 940 + pseudogene predicted gene 6539
Rps2-ps13 X 52898588 to 52899469 881 + pseudogene ribosomal protein S2, pseudogene 13
Cpgi22717 X 52911849 to 52912657 808 CpG island CpG island 22717
Tssr160945 X 52912208 to 52912220 12 + TSS region transcription start site region 160945
Tssr160946 X 52912232 to 52912361 129 + TSS region transcription start site region 160946
Phf6 X 52912266 to 52956943 44677 + protein coding gene PHD finger protein 6
Tssr160947 X 52912367 to 52912380 13 + TSS region transcription start site region 160947
Tssr163375 X 52913147 to 52913156 9 - TSS region transcription start site region 163375
Tssr160948 X 52913475 to 52913498 23 + TSS region transcription start site region 160948
Tssr160949 X 52926949 to 52926963 14 + TSS region transcription start site region 160949
Tssr160950 X 52926975 to 52927002 27 + TSS region transcription start site region 160950
Tssr160951 X 52927004 to 52927015 11 + TSS region transcription start site region 160951
Tssr160952 X 52927022 to 52927034 12 + TSS region transcription start site region 160952
DXMit22 X 52983371 to 52983614 243 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 22
Cpgi22718 X 52987975 to 52988800 825 CpG island CpG island 22718
Tssr160953 X 52988075 to 52988078 3 + TSS region transcription start site region 160953
Tssr160954 X 52988082 to 52988115 33 + TSS region transcription start site region 160954
Tssr160955 X 52988119 to 52988148 29 + TSS region transcription start site region 160955
Hprt X 52988137 to 53021659 33522 + protein coding gene hypoxanthine guanine phosphoribosyl transferase
Tssr160956 X 52988155 to 52988199 44 + TSS region transcription start site region 160956
Tssr160957 X 52988209 to 52988211 2 + TSS region transcription start site region 160957
Tssr160958 X 53002158 to 53002185 27 + TSS region transcription start site region 160958
Tssr160959 X 53008663 to 53008693 30 + TSS region transcription start site region 160959
Tssr160960 X 53016358 to 53016404 46 + TSS region transcription start site region 160960
Tssr160961 X 53020095 to 53020122 27 + TSS region transcription start site region 160961
DXMit23 X 53029767 to 53030015 248 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 23
Tssr5620 X 53039860 to 53039872 12 + TSS region transcription start site region 5620
Mirc47 X 53047997 to 53048367 370 complex/cluster/region microRNA cluster 47, including Mir450b through Mir450a-2
Mir450b X 53047997 to 53048078 81 - miRNA gene microRNA 450b
Mir450-1 X 53048154 to 53048244 90 - miRNA gene microRNA 450-1
Mir450-2 X 53048299 to 53048367 68 - miRNA gene microRNA 450-2
Mir542 X 53049403 to 53049487 84 - miRNA gene microRNA 542
Gm28730 X 53051194 to 53053159 1965 - lincRNA gene predicted gene 28730
Mir351 X 53053255 to 53053353 98 - miRNA gene microRNA 351
Mirc24 X 53053255 to 53054349 1094 complex/cluster/region microRNA cluster 24, including Mir351 through Mir322
Tssr163376 X 53053271 to 53053275 4 - TSS region transcription start site region 163376
Mir503 X 53053984 to 53054054 70 - miRNA gene microRNA 503
Mir322 X 53054255 to 53054349 94 - miRNA gene microRNA 322
C430049B03Rik X 53055046 to 53057190 2144 - lncRNA gene RIKEN cDNA C430049B03 gene
Tssr163377 X 53055376 to 53055391 15 - TSS region transcription start site region 163377
Cpgi22719 X 53056738 to 53057503 765 CpG island CpG island 22719
Tssr163378 X 53057183 to 53057200 17 - TSS region transcription start site region 163378
Gm35988 X 53063860 to 53167728 103868 + lncRNA gene predicted gene, 35988
Plac1 X 53069995 to 53240111 170116 - protein coding gene placental specific protein 1
Tssr163379 X 53070464 to 53070490 26 - TSS region transcription start site region 163379
Tssr163380 X 53070567 to 53070578 11 - TSS region transcription start site region 163380
Tssr163381 X 53070651 to 53070669 18 - TSS region transcription start site region 163381
DXJti2 X 53075906 to 53076359 453 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 2
DXDcr1 X 53097215 to 53097310 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 1
DXJti3 X 53102885 to 53103171 286 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 3
Tssr163382 X 53114362 to 53114368 6 - TSS region transcription start site region 163382
Tssr163383 X 53114392 to 53114412 20 - TSS region transcription start site region 163383
Tssr163384 X 53114509 to 53114524 15 - TSS region transcription start site region 163384
Tssr163385 X 53114555 to 53114566 11 - TSS region transcription start site region 163385
Tssr163386 X 53121704 to 53121754 50 - TSS region transcription start site region 163386
DXMit159 X 53170226 to 53170319 93 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 159