Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:147088696-147290947

29 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Polr1d	5	147077346 to 147111361	34015	+	protein coding gene	polymerase (RNA) I polypeptide D
Rps10-ps4	5	147100562 to 147101053	491	-	pseudogene	ribosomal protein S10, pseudogene 4
Gm34994	5	147159300 to 147168623	9323	+	lncRNA gene	predicted gene, 34994
Cpgi17040	5	147186007 to 147186451	444		CpG island	CpG island 17040
Cpgi17041	5	147186775 to 147187893	1118		CpG island	CpG island 17041
Cpgi17042	5	147188191 to 147190515	2324		CpG island	CpG island 17042
Tssr49806	5	147188678 to 147188684	6	+	TSS region	transcription start site region 49806
Gsx1	5	147188696 to 147190947	2251	+	protein coding gene	GS homeobox 1
Cpgi17043	5	147191254 to 147192005	751		CpG island	CpG island 17043
Cpgi17044	5	147192448 to 147192720	272		CpG island	CpG island 17044
Gm24556	5	147200124 to 147200253	129	-	snoRNA gene	predicted gene, 24556
Cpgi17045	5	147207746 to 147208321	575		CpG island	CpG island 17045
Gm38751	5	147217824 to 147221865	4041	-	lncRNA gene	predicted gene, 38751
Tssr54502	5	147221803 to 147221815	12	-	TSS region	transcription start site region 54502
Tssr54503	5	147221836 to 147221854	18	-	TSS region	transcription start site region 54503
Cpgi17046	5	147227345 to 147227783	438		CpG island	CpG island 17046
Plut	5	147228598 to 147271521	42923	-	antisense lncRNA gene	PDX1 associated lncRNA, upregulator of transcription
Tssr54504	5	147235544 to 147235557	13	-	TSS region	transcription start site region 54504
Gm38750	5	147236878 to 147238580	1702	-	lncRNA gene	predicted gene, 38750
Cpgi17047	5	147253618 to 147253805	187		CpG island	CpG island 17047
Tssr49807	5	147270091 to 147270102	11	+	TSS region	transcription start site region 49807
Tssr49808	5	147270110 to 147270139	29	+	TSS region	transcription start site region 49808
Cpgi17048	5	147270130 to 147270670	540		CpG island	CpG island 17048
Pdx1	5	147270131 to 147275149	5018	+	protein coding gene	pancreatic and duodenal homeobox 1
Tssr49809	5	147270146 to 147270168	22	+	TSS region	transcription start site region 49809
Cpgi17049	5	147274478 to 147274949	471		CpG island	CpG island 17049
Gm27033	5	147280720 to 147281263	543	+	lincRNA gene	predicted gene, 27033
Mir7k	5	147283189 to 147283298	109	-	miRNA gene	microRNA 7k
Gm35112	5	147290184 to 147297978	7794	-	lncRNA gene	predicted gene, 35112