Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:97830173-98067018

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Pde4dip	3	97689828 to 97888707	198879	-	protein coding gene	phosphodiesterase 4D interacting protein (myomegalin)
Cpgi13597	3	97867730 to 97868517	787		CpG island	CpG island 13597
Tssr34677	3	97868066 to 97868077	11	-	TSS region	transcription start site region 34677
Tssr34678	3	97868146 to 97868157	11	-	TSS region	transcription start site region 34678
Tssr34679	3	97868164 to 97868179	15	-	TSS region	transcription start site region 34679
Tssr34680	3	97868191 to 97868204	13	-	TSS region	transcription start site region 34680
Tssr34681	3	97868223 to 97868228	5	-	TSS region	transcription start site region 34681
Tssr34682	3	97868242 to 97868261	19	-	TSS region	transcription start site region 34682
Tssr34683	3	97868270 to 97868281	11	-	TSS region	transcription start site region 34683
Tssr34684	3	97869689 to 97869693	4	-	TSS region	transcription start site region 34684
Cpgi13598	3	97888175 to 97888910	735		CpG island	CpG island 13598
Tssr34685	3	97888628 to 97888647	19	-	TSS region	transcription start site region 34685
Tssr34686	3	97888686 to 97888819	133	-	TSS region	transcription start site region 34686
Tssr34687	3	97888827 to 97888845	18	-	TSS region	transcription start site region 34687
Tssr34688	3	97888911 to 97888929	18	-	TSS region	transcription start site region 34688
Gm15999	3	97892231 to 97901089	8858	-	lincRNA gene	predicted gene 15999
Cpgi13599	3	97901096 to 97901571	475		CpG island	CpG island 13599
Tssr30804	3	97901199 to 97901250	51	+	TSS region	transcription start site region 30804
Sec22b	3	97901227 to 97922318	21091	+	protein coding gene	SEC22 homolog B, vesicle trafficking protein
Tssr30805	3	97922188 to 97922242	54	+	TSS region	transcription start site region 30805
Gm5544	3	97930173 to 97967018	36845	+	lincRNA gene	predicted gene 5544
Tssr30806	3	97930275 to 97930284	9	+	TSS region	transcription start site region 30806
Tssr30807	3	97930394 to 97930422	28	+	TSS region	transcription start site region 30807
Tssr34689	3	97931658 to 97931718	60	-	TSS region	transcription start site region 34689
Tssr34690	3	97931720 to 97931746	26	-	TSS region	transcription start site region 34690
Tssr30808	3	97978922 to 97978986	64	+	TSS region	transcription start site region 30808
Tssr30809	3	97992465 to 97992469	4	+	TSS region	transcription start site region 30809
Tssr34691	3	97994938 to 97994963	25	-	TSS region	transcription start site region 34691
Tssr975	3	97998416 to 97998425	9	-	TSS region	transcription start site region 975
D3Mit298.2	3	98010743 to 98010858	115		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 298.2
Cpgi13600	3	98013007 to 98014283	1276		CpG island	CpG island 13600
Tssr30810	3	98013483 to 98013502	19	+	TSS region	transcription start site region 30810
Tssr30811	3	98013503 to 98013547	44	+	TSS region	transcription start site region 30811
Notch2	3	98013538 to 98150367	136829	+	protein coding gene	notch 2
Tssr30812	3	98013550 to 98013574	24	+	TSS region	transcription start site region 30812
Tssr30813	3	98013592 to 98013609	17	+	TSS region	transcription start site region 30813
Tssr30814	3	98013620 to 98013631	11	+	TSS region	transcription start site region 30814
Gm40103	3	98022306 to 98026882	4576	-	lncRNA gene	predicted gene, 40103
Cpgi13601	3	98024433 to 98024593	160		CpG island	CpG island 13601
Gm42819	3	98030687 to 98035807	5120	+	unclassified gene	predicted gene 42819
Tssr34692	3	98032354 to 98032359	5	-	TSS region	transcription start site region 34692
Tssr30815	3	98037439 to 98037443	4	+	TSS region	transcription start site region 30815
Tssr30816	3	98045087 to 98045090	3	+	TSS region	transcription start site region 30816