Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:20022084-20255266

39 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Hps3	3	19995945 to 20035315	39370	-	protein coding gene	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
Cpgi13007	3	20034835 to 20035529	694		CpG island	CpG island 13007
Tssr32705	3	20035269 to 20035283	14	-	TSS region	transcription start site region 32705
Tssr32706	3	20035285 to 20035325	40	-	TSS region	transcription start site region 32706
D830024F11Rik	3	20056574 to 20058155	1581		unclassified gene	RIKEN cDNA D830024F11 gene
Cpgi13008	3	20057507 to 20058182	675		CpG island	CpG island 13008
Tssr28557	3	20057802 to 20057857	55	+	TSS region	transcription start site region 28557
Hltf	3	20057811 to 20118490	60679	+	protein coding gene	helicase-like transcription factor
Tssr28558	3	20057878 to 20057885	7	+	TSS region	transcription start site region 28558
Tssr28559	3	20058336 to 20058352	16	+	TSS region	transcription start site region 28559
Tssr28560	3	20062647 to 20062659	12	+	TSS region	transcription start site region 28560
Tssr28561	3	20105030 to 20105042	12	+	TSS region	transcription start site region 28561
Gyg	3	20122084 to 20155266	33182	-	protein coding gene	glycogenin
Tssr32707	3	20122473 to 20122478	5	-	TSS region	transcription start site region 32707
Tssr32708	3	20132513 to 20132516	3	-	TSS region	transcription start site region 32708
Tssr32709	3	20150600 to 20150617	17	-	TSS region	transcription start site region 32709
Cpgi13009	3	20154408 to 20155273	865		CpG island	CpG island 13009
Tssr841	3	20155056 to 20155072	16	-	TSS region	transcription start site region 841
Tssr32710	3	20155090 to 20155122	32	-	TSS region	transcription start site region 32710
Tssr28562	3	20198131 to 20198171	40	+	TSS region	transcription start site region 28562
Cpa3	3	20215620 to 20242181	26561	-	protein coding gene	carboxypeptidase A3, mast cell
Mir7007	3	20222290 to 20222359	69	-	miRNA gene	microRNA 7007
Gm31320	3	20222293 to 20229475	7182	+	lncRNA gene	predicted gene, 31320
Tssr28563	3	20223101 to 20223145	44	+	TSS region	transcription start site region 28563
Gm7428	3	20223771 to 20224687	916	-	pseudogene	predicted gene 7428
Tssr32711	3	20242158 to 20242167	9	-	TSS region	transcription start site region 32711
Tssr32712	3	20242173 to 20242187	14	-	TSS region	transcription start site region 32712
Tssr32713	3	20242189 to 20242198	9	-	TSS region	transcription start site region 32713
Cpb1	3	20249479 to 20275733	26254	-	protein coding gene	carboxypeptidase B1 (tissue)
Tssr32714	3	20249512 to 20249533	21	-	TSS region	transcription start site region 32714
Tssr32715	3	20249545 to 20249555	10	-	TSS region	transcription start site region 32715
Tssr32716	3	20249556 to 20249581	25	-	TSS region	transcription start site region 32716
Tssr28564	3	20249559 to 20249587	28	+	TSS region	transcription start site region 28564
Tssr32717	3	20249609 to 20249635	26	-	TSS region	transcription start site region 32717
Tssr32718	3	20249645 to 20249713	68	-	TSS region	transcription start site region 32718
Tssr32719	3	20249743 to 20249805	62	-	TSS region	transcription start site region 32719
Tssr32720	3	20249814 to 20249840	26	-	TSS region	transcription start site region 32720
Tssr28565	3	20251956 to 20251993	37	+	TSS region	transcription start site region 28565
Tssr32721	3	20251982 to 20252022	40	-	TSS region	transcription start site region 32721