Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:53339507-53739520

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mxi1 19 53310506 to 53375810 65304 + protein coding gene MAX interactor 1, dimerization protein
Tssr156975 19 53352887 to 53352893 6 + TSS region transcription start site region 156975
Tssr156976 19 53357243 to 53357252 9 + TSS region transcription start site region 156976
Gm10197 19 53371566 to 53371766 200 - protein coding gene predicted gene 10197
Smndc1 19 53379214 to 53390573 11359 - protein coding gene survival motor neuron domain containing 1
Tssr159815 19 53389671 to 53389675 4 - TSS region transcription start site region 159815
Cpgi11060 19 53389796 to 53391110 1314 CpG island CpG island 11060
Tssr159816 19 53390535 to 53390544 9 - TSS region transcription start site region 159816
Tssr159817 19 53390550 to 53390555 5 - TSS region transcription start site region 159817
Tssr159818 19 53390559 to 53390581 22 - TSS region transcription start site region 159818
Tssr159819 19 53390589 to 53390622 33 - TSS region transcription start site region 159819
Tssr156977 19 53390773 to 53390820 47 + TSS region transcription start site region 156977
8030456M14Rik 19 53390788 to 53391796 1008 unclassified gene RIKEN cDNA 8030456M14 gene
Tssr156978 19 53390881 to 53390930 49 + TSS region transcription start site region 156978
Tssr156979 19 53421229 to 53421233 4 + TSS region transcription start site region 156979
Tssr156980 19 53421314 to 53421328 14 + TSS region transcription start site region 156980
Tssr156981 19 53421374 to 53421386 12 + TSS region transcription start site region 156981
Tssr156982 19 53421619 to 53421647 28 + TSS region transcription start site region 156982
Tssr159820 19 53423343 to 53423362 19 - TSS region transcription start site region 159820
Cpgi11061 19 53423478 to 53423905 427 CpG island CpG island 11061
Tssr159821 19 53424228 to 53424236 8 - TSS region transcription start site region 159821
Tssr156983 19 53424412 to 53424417 5 + TSS region transcription start site region 156983
Tssr159822 19 53424728 to 53424744 16 - TSS region transcription start site region 159822
Cpgi11062 19 53424756 to 53425026 270 CpG island CpG island 11062
Tssr159823 19 53424787 to 53424801 14 - TSS region transcription start site region 159823
D19Mit54 19 53439387 to 53439513 126 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 54
Mirt1 19 53441212 to 53464796 23584 - lincRNA gene myocardial infarction associated transcript 1
Tssr159824 19 53441471 to 53441479 8 - TSS region transcription start site region 159824
Tssr159825 19 53451518 to 53451534 16 - TSS region transcription start site region 159825
Tssr159826 19 53460248 to 53460262 14 - TSS region transcription start site region 159826
Tssr156984 19 53460610 to 53460654 44 + TSS region transcription start site region 156984
4833407H14Rik 19 53460631 to 53462723 2092 + lincRNA gene RIKEN cDNA 4833407H14 gene
Tssr159827 19 53464721 to 53464833 112 - TSS region transcription start site region 159827
Gm30826 19 53488977 to 53492649 3672 - lncRNA gene predicted gene, 30826
Cpgi11063 19 53500398 to 53500787 389 CpG island CpG island 11063
Cpgi11064 19 53528650 to 53530195 1545 CpG island CpG island 11064
Tssr159828 19 53528872 to 53528881 9 - TSS region transcription start site region 159828
Tssr159829 19 53528895 to 53528909 14 - TSS region transcription start site region 159829
Tssr159830 19 53528961 to 53528989 28 - TSS region transcription start site region 159830
Tssr156985 19 53529100 to 53529105 5 + TSS region transcription start site region 156985
Tssr156986 19 53529137 to 53529151 14 + TSS region transcription start site region 156986
Dusp5 19 53529318 to 53541322 12004 + protein coding gene dual specificity phosphatase 5
Tssr156987 19 53533810 to 53533821 11 + TSS region transcription start site region 156987
Tssr156988 19 53533824 to 53533839 15 + TSS region transcription start site region 156988
Tssr156989 19 53533901 to 53533912 11 + TSS region transcription start site region 156989
Tssr156990 19 53533926 to 53533942 16 + TSS region transcription start site region 156990
Tssr156991 19 53537460 to 53537479 19 + TSS region transcription start site region 156991
Tssr156992 19 53537490 to 53537506 16 + TSS region transcription start site region 156992
Tssr156993 19 53537515 to 53537531 16 + TSS region transcription start site region 156993
Tssr156994 19 53537674 to 53537680 6 + TSS region transcription start site region 156994
Tssr156995 19 53539373 to 53539391 18 + TSS region transcription start site region 156995
Tssr156996 19 53539507 to 53539520 13 + TSS region transcription start site region 156996
Tssr156997 19 53539620 to 53539638 18 + TSS region transcription start site region 156997
Tssr156998 19 53539703 to 53539718 15 + TSS region transcription start site region 156998
Tssr159831 19 53541118 to 53541125 7 - TSS region transcription start site region 159831
Tssr156999 19 53547929 to 53547941 12 + TSS region transcription start site region 156999
Tssr159832 19 53573319 to 53573331 12 - TSS region transcription start site region 159832
Nutf2-ps1 19 53588204 to 53589067 863 - pseudogene nuclear transport factor 2, pseudogene 1
Cpgi11065 19 53599875 to 53601543 1668 CpG island CpG island 11065
Tssr159833 19 53600005 to 53600013 8 - TSS region transcription start site region 159833
Tssr157000 19 53600160 to 53600174 14 + TSS region transcription start site region 157000
Tssr157001 19 53600377 to 53600435 58 + TSS region transcription start site region 157001
Smc3 19 53600396 to 53645831 45435 + protein coding gene structural maintenance of chromosomes 3
Tssr157002 19 53600449 to 53600478 29 + TSS region transcription start site region 157002
Tssr157003 19 53609367 to 53609371 4 + TSS region transcription start site region 157003
Tssr157004 19 53618891 to 53618896 5 + TSS region transcription start site region 157004
Tssr157005 19 53621826 to 53621861 35 + TSS region transcription start site region 157005
Tssr157006 19 53623045 to 53623058 13 + TSS region transcription start site region 157006
Tssr157007 19 53623149 to 53623186 37 + TSS region transcription start site region 157007
Tssr157008 19 53633987 to 53634005 18 + TSS region transcription start site region 157008
Tssr157009 19 53639327 to 53639369 42 + TSS region transcription start site region 157009
Tssr157010 19 53660987 to 53661003 16 + TSS region transcription start site region 157010
Gm46653 19 53673178 to 53675863 2685 - lncRNA gene predicted gene, 46653
Cpgi11066 19 53676228 to 53677711 1483 CpG island CpG island 11066
Tssr157011 19 53676373 to 53676416 43 + TSS region transcription start site region 157011
Tssr157012 19 53677286 to 53677291 5 + TSS region transcription start site region 157012
Rbm20 19 53677306 to 53867080 189774 + protein coding gene RNA binding motif protein 20
Tssr157013 19 53677327 to 53677340 13 + TSS region transcription start site region 157013
Tssr157014 19 53677363 to 53677379 16 + TSS region transcription start site region 157014
Tssr157015 19 53677395 to 53677425 30 + TSS region transcription start site region 157015
Tssr157016 19 53700641 to 53700653 12 + TSS region transcription start site region 157016
Tssr157017 19 53700743 to 53700750 7 + TSS region transcription start site region 157017
Tssr157018 19 53700865 to 53700887 22 + TSS region transcription start site region 157018
Cpgi11067 19 53704916 to 53705297 381 CpG island CpG island 11067
Tssr157019 19 53717845 to 53717857 12 + TSS region transcription start site region 157019
Tssr157020 19 53717891 to 53717904 13 + TSS region transcription start site region 157020
Tssr157021 19 53717919 to 53717937 18 + TSS region transcription start site region 157021
Tssr157022 19 53717968 to 53717982 14 + TSS region transcription start site region 157022
Tssr157023 19 53718024 to 53718041 17 + TSS region transcription start site region 157023
Tssr157024 19 53739239 to 53739244 5 + TSS region transcription start site region 157024