Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:70215610-70422628

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3172 11 70213793 to 70215791 1998 CpG island CpG island 3172
Slc16a11 11 70213910 to 70216414 2504 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 11
Slc16a13 11 70216789 to 70221064 4275 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 13
Tssr108917 11 70219045 to 70219062 17 - TSS region transcription start site region 108917
Cpgi3173 11 70220246 to 70220802 556 CpG island CpG island 3173
Tssr108918 11 70220697 to 70220709 12 - TSS region transcription start site region 108918
Tssr108919 11 70220776 to 70220790 14 - TSS region transcription start site region 108919
Tssr108920 11 70220794 to 70220832 38 - TSS region transcription start site region 108920
Tssr108921 11 70220969 to 70221027 58 - TSS region transcription start site region 108921
Tssr102674 11 70221224 to 70221240 16 + TSS region transcription start site region 102674
Bcl6b 11 70224128 to 70229798 5670 - protein coding gene B cell CLL/lymphoma 6, member B
Cpgi3174 11 70226471 to 70226986 515 CpG island CpG island 3174
Tssr108922 11 70227289 to 70227297 8 - TSS region transcription start site region 108922
Cpgi3175 11 70228929 to 70229619 690 CpG island CpG island 3175
Tssr108923 11 70229755 to 70229761 6 - TSS region transcription start site region 108923
Tssr108924 11 70230216 to 70230241 25 - TSS region transcription start site region 108924
Cpgi3176 11 70230328 to 70230743 415 CpG island CpG island 3176
Mir497b 11 70234692 to 70234816 124 - miRNA gene microRNA 497b
Mir497 11 70234717 to 70234800 83 + miRNA gene microRNA 497
Mirc27 11 70234717 to 70235135 418 complex/cluster/region microRNA cluster 27, including Mir497 through Mir195a
Mir195a 11 70235042 to 70235135 93 + miRNA gene microRNA 195a
Gm21988 11 70235206 to 70239830 4624 - protein coding gene predicted gene 21988
0610010K14Rik 11 70235206 to 70237914 2708 - protein coding gene RIKEN cDNA 0610010K14 gene
Cpgi3177 11 70237283 to 70238530 1247 CpG island CpG island 3177
Tssr108925 11 70237570 to 70237600 30 - TSS region transcription start site region 108925
Tssr108926 11 70237605 to 70237633 28 - TSS region transcription start site region 108926
Tssr108927 11 70237638 to 70237651 13 - TSS region transcription start site region 108927
Tssr108928 11 70237761 to 70237781 20 - TSS region transcription start site region 108928
Tssr108929 11 70237852 to 70237885 33 - TSS region transcription start site region 108929
Tssr108930 11 70237886 to 70237919 33 - TSS region transcription start site region 108930
Tssr102675 11 70238010 to 70238031 21 + TSS region transcription start site region 102675
Rnasek 11 70238124 to 70239842 1718 - protein coding gene ribonuclease, RNase K
Tssr108931 11 70238305 to 70238322 17 - TSS region transcription start site region 108931
Tssr108932 11 70238372 to 70238388 16 - TSS region transcription start site region 108932
Tssr108933 11 70238393 to 70238420 27 - TSS region transcription start site region 108933
Tssr108934 11 70238464 to 70238475 11 - TSS region transcription start site region 108934
Tssr108935 11 70238958 to 70238970 12 - TSS region transcription start site region 108935
Gm40191 11 70239001 to 70269430 30429 + lncRNA gene predicted gene, 40191
Tssr108936 11 70239207 to 70239219 12 - TSS region transcription start site region 108936
Cpgi3178 11 70239505 to 70240102 597 CpG island CpG island 3178
Tssr108937 11 70239707 to 70239712 5 - TSS region transcription start site region 108937
Tssr108938 11 70239766 to 70239772 6 - TSS region transcription start site region 108938
Tssr108939 11 70239794 to 70239860 66 - TSS region transcription start site region 108939
Alox12 11 70241457 to 70255353 13896 - protein coding gene arachidonate 12-lipoxygenase
Cpgi3179 11 70254479 to 70255403 924 CpG island CpG island 3179
Tssr108940 11 70255329 to 70255347 18 - TSS region transcription start site region 108940
Gm32992 11 70280244 to 70285954 5710 + lncRNA gene predicted gene, 32992
Gm33048 11 70287377 to 70288384 1007 + lncRNA gene predicted gene, 33048
Gm40192 11 70290987 to 70294239 3252 + lncRNA gene predicted gene, 40192
Alox12e 11 70315610 to 70322628 7018 - protein coding gene arachidonate lipoxygenase, epidermal
Cpgi3180 11 70321657 to 70322423 766 CpG island CpG island 3180
Tssr108941 11 70322464 to 70322476 12 - TSS region transcription start site region 108941
Tssr108942 11 70322502 to 70322514 12 - TSS region transcription start site region 108942
Tssr108943 11 70322520 to 70322537 17 - TSS region transcription start site region 108943
Alox15 11 70344152 to 70352031 7879 - protein coding gene arachidonate 15-lipoxygenase
Tssr108944 11 70345702 to 70345723 21 - TSS region transcription start site region 108944
Cpgi3181 11 70351844 to 70352003 159 CpG island CpG island 3181
Tssr108945 11 70352029 to 70352032 3 - TSS region transcription start site region 108945
Gm12312 11 70358138 to 70358781 643 + pseudogene predicted gene 12312
Tssr108946 11 70358407 to 70358414 7 - TSS region transcription start site region 108946
Tssr108947 11 70381959 to 70381963 4 - TSS region transcription start site region 108947
Pelp1 11 70392883 to 70410031 17148 - protein coding gene proline, glutamic acid and leucine rich protein 1
Tssr108948 11 70394411 to 70394428 17 - TSS region transcription start site region 108948
Tssr108949 11 70407139 to 70407143 4 - TSS region transcription start site region 108949
Tssr108950 11 70408943 to 70408949 6 - TSS region transcription start site region 108950
Cpgi3182 11 70409479 to 70410493 1014 CpG island CpG island 3182
Tssr108951 11 70410010 to 70410042 32 - TSS region transcription start site region 108951