Project measure / variable:   Graubert1   carcinoma_lung

ID, description, units MPD:11617   carcinoma_lung   lung carcinoma frequency rate   [score]  control  
ENU study
Data set, strains Graubert1   inbred   20 strains     sex: both     age: 13-68wks
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  STRAIN COMPARISON PLOT
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Graubert1 - lung carcinoma frequency rate control



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains20 strains
Mean of the strain means0   score 0.00835   score
Median of the strain means0   score 0   score
SD of the strain means± 0 ± 0.0373
Coefficient of variation (CV)0 4.47
Min–max range of strain means0   –   0   score 0   –   0.167   score
Mean sample size per strain5.6   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0047 0.0047 1.0074 0.3169
strain 18 0.0787 0.0044 0.9337 0.539
sex:strain 18 0.0786 0.0044 0.9332 0.5396
Residuals 178 0.8333 0.0047


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   6 0.0 0.0 0.0
129S1/SvImJ m 0.0 0.0   6 0.0 0.0 -0.22
A/J f 0.0 0.0   4 0.0 0.0 0.0
A/J m 0.0 0.0   6 0.0 0.0 -0.22
AKR/J f 0.0 0.0   6 0.0 0.0 0.0
AKR/J m 0.0 0.0   6 0.0 0.0 -0.22
BALB/cByJ f 0.0 0.0   6 0.0 0.0 0.0
BALB/cByJ m 0.167 0.408   6 0.167 2.45 4.25
C3H/HeJ f 0.0 0.0   6 0.0 0.0 0.0
C3H/HeJ m 0.0 0.0   6 0.0 0.0 -0.22
C57BL/6J f 0.0 0.0   6 0.0 0.0 0.0
C57BL/6J m 0.0 0.0   6 0.0 0.0 -0.22
C57L/J f 0.0 0.0   6 0.0 0.0 0.0
C57L/J m 0.0 0.0   6 0.0 0.0 -0.22
C58/J f 0.0 0.0   6 0.0 0.0 0.0
C58/J m 0.0 0.0   6 0.0 0.0 -0.22
CAST/EiJ f 0.0 0.0   6 0.0 0.0 0.0
CAST/EiJ m 0.0 0.0   6 0.0 0.0 -0.22
DBA/2J f 0.0 0.0   6 0.0 0.0 0.0
DBA/2J m 0.0 0.0   2   0.0 0.0 -0.22
FVB/NJ f 0.0 0.0   6 0.0 0.0 0.0
FVB/NJ m 0.0 0.0   6 0.0 0.0 -0.22
MOLF/EiJ f 0.0 0.0   1   0.0 0.0 0.0
MOLF/EiJ m 0.0 0.0   6 0.0 0.0 -0.22
NOD/ShiLtJ f 0.0 0.0   6 0.0 0.0 0.0
NOD/ShiLtJ m 0.0 0.0   6 0.0 0.0 -0.22
NZB/BlNJ f 0.0 0.0   6 0.0 0.0 0.0
NZB/BlNJ m 0.0 0.0   6 0.0 0.0 -0.22
PERA/EiJ f 0.0 0.0   6 0.0 0.0 0.0
PERA/EiJ m 0.0 0.0   6 0.0 0.0 -0.22
PL/J f 0.0 0.0   6 0.0 0.0 0.0
PL/J m 0.0 0.0   6 0.0 0.0 -0.22
SJL/J f 0.0 0.0   8 0.0 0.0 0.0
SJL/J m 0.0 0.0   6 0.0 0.0 -0.22
SM/J f 0.0 0.0   6 0.0 0.0 0.0
SM/J m 0.0 0.0   6 0.0 0.0 -0.22
SPRET/EiJ f 0.0 0.0   3 0.0 0.0 0.0
SPRET/EiJ m 0.0 0.0   3 0.0 0.0 -0.22
SWR/J f 0.0 0.0   4 0.0 0.0 0.0
SWR/J m 0.0 0.0   6 0.0 0.0 -0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0279 0.0551 -0.0551
129S1/SvImJ m 0.0 0.0279 0.0551 -0.0551
A/J f 0.0 0.0342 0.0675 -0.0675
A/J m 0.0 0.0279 0.0551 -0.0551
AKR/J f 0.0 0.0279 0.0551 -0.0551
AKR/J m 0.0 0.0279 0.0551 -0.0551
BALB/cByJ f 0.0 0.0279 0.0551 -0.0551
BALB/cByJ m 0.1667 0.0279 0.2218 0.1115
C3H/HeJ f 0.0 0.0279 0.0551 -0.0551
C3H/HeJ m 0.0 0.0279 0.0551 -0.0551
C57BL/6J f 0.0 0.0279 0.0551 -0.0551
C57BL/6J m 0.0 0.0279 0.0551 -0.0551
C57L/J f 0.0 0.0279 0.0551 -0.0551
C57L/J m 0.0 0.0279 0.0551 -0.0551
C58/J f 0.0 0.0279 0.0551 -0.0551
C58/J m 0.0 0.0279 0.0551 -0.0551
CAST/EiJ f 0.0 0.0279 0.0551 -0.0551
CAST/EiJ m 0.0 0.0279 0.0551 -0.0551
DBA/2J f 0.0 0.0279 0.0551 -0.0551
DBA/2J m 0.0 0.0484 0.0955 -0.0955
FVB/NJ f 0.0 0.0279 0.0551 -0.0551
FVB/NJ m 0.0 0.0279 0.0551 -0.0551
NOD/ShiLtJ f 0.0 0.0279 0.0551 -0.0551
NOD/ShiLtJ m 0.0 0.0279 0.0551 -0.0551
NZB/BlNJ f 0.0 0.0279 0.0551 -0.0551
NZB/BlNJ m 0.0 0.0279 0.0551 -0.0551
PERA/EiJ f 0.0 0.0279 0.0551 -0.0551
PERA/EiJ m 0.0 0.0279 0.0551 -0.0551
PL/J f 0.0 0.0279 0.0551 -0.0551
PL/J m 0.0 0.0279 0.0551 -0.0551
SJL/J f 0.0 0.0242 0.0477 -0.0477
SJL/J m 0.0 0.0279 0.0551 -0.0551
SM/J f 0.0 0.0279 0.0551 -0.0551
SM/J m 0.0 0.0279 0.0551 -0.0551
SPRET/EiJ f 0.0 0.0395 0.078 -0.078
SPRET/EiJ m 0.0 0.0395 0.078 -0.078
SWR/J f 0.0 0.0342 0.0675 -0.0675
SWR/J m 0.0 0.0279 0.0551 -0.0551


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.0198 0.039 -0.039
A/J both 0.0 0.0221 0.0436 -0.0436
AKR/J both 0.0 0.0198 0.039 -0.039
BALB/cByJ both 0.0833 0.0198 0.1223 0.0444
C3H/HeJ both 0.0 0.0198 0.039 -0.039
C57BL/6J both 0.0 0.0198 0.039 -0.039
C57L/J both 0.0 0.0198 0.039 -0.039
C58/J both 0.0 0.0198 0.039 -0.039
CAST/EiJ both 0.0 0.0198 0.039 -0.039
DBA/2J both 0.0 0.0279 0.0551 -0.0551
FVB/NJ both 0.0 0.0198 0.039 -0.039
NOD/ShiLtJ both 0.0 0.0198 0.039 -0.039
NZB/BlNJ both 0.0 0.0198 0.039 -0.039
PERA/EiJ both 0.0 0.0198 0.039 -0.039
PL/J both 0.0 0.0198 0.039 -0.039
SJL/J both 0.0 0.0185 0.0365 -0.0365
SM/J both 0.0 0.0198 0.039 -0.039
SPRET/EiJ both 0.0 0.0279 0.0551 -0.0551
SWR/J both 0.0 0.0221 0.0436 -0.0436




  GWAS USING LINEAR MIXED MODELS