Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:5461291-7231292

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mycs X 5466904 to 5469265 2361 - protein coding gene myc-like oncogene, s-myc protein
Cpgi22558 X 5467893 to 5468744 851 CpG island CpG island 22558
Cpgi22559 X 5558151 to 5558307 156 CpG island CpG island 22559
Gm14366 X 5608572 to 5609151 579 - pseudogene predicted gene 14366
Gm14375 X 5665372 to 5666226 854 + pseudogene predicted gene 14375
Btbd35f7 X 5669067 to 5671026 1959 + protein coding gene BTB domain containing 35, family member 7
Gm14373 X 5699730 to 5701872 2142 - pseudogene predicted gene 14373
Gm39489 X 5730162 to 5749677 19515 - lncRNA gene predicted gene, 39489
Tssr5581 X 5824088 to 5824090 2 + TSS region transcription start site region 5581
Gm14452 X 5859765 to 5861537 1772 + pseudogene predicted gene 14452
Gm14451 X 5869686 to 5871458 1772 - pseudogene predicted gene 14451
Gm14448 X 5885743 to 5885952 209 - pseudogene predicted gene 14448
Tssr160355 X 5984669 to 5984710 41 + TSS region transcription start site region 160355
Gm14450 X 5984772 to 5985011 239 + pseudogene predicted gene 14450
Gm26618 X 6027056 to 6092269 65213 - sense overlapping lncRNA gene predicted gene, 26618
Nudt11 X 6047507 to 6054751 7244 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 11
Rpl19-ps12 X 6071222 to 6071812 590 + pseudogene ribosomal protein L19, pseudogene 12
Gm27360 X 6071478 to 6071557 79 + miRNA gene predicted gene, 27360
AU022751 X 6081219 to 6083419 2200 - protein coding gene expressed sequence AU022751
Cpgi22560 X 6082097 to 6082701 604 CpG island CpG island 22560
Cpgi22561 X 6082962 to 6083432 470 CpG island CpG island 22561
Tssr162767 X 6083415 to 6083423 8 - TSS region transcription start site region 162767
Cpgi22562 X 6092111 to 6092368 257 CpG island CpG island 22562
Gm33733 X 6092424 to 6229711 137287 + lncRNA gene predicted gene, 33733
DXMit101 X 6106713 to 6106833 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 101
n-R5s2 X 6106891 to 6107009 118 + rRNA gene nuclear encoded rRNA 5S 2
Nudt10 X 6168696 to 6173015 4319 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 10
Tssr162768 X 6171827 to 6171832 5 - TSS region transcription start site region 162768
Gm46685 X 6238400 to 6241113 2713 + lncRNA gene predicted gene, 46685
Bmp15 X 6314107 to 6320721 6614 - protein coding gene bone morphogenetic protein 15
Tssr162769 X 6320717 to 6320726 9 - TSS region transcription start site region 162769
Tssr5582 X 6346291 to 6346292 1 + TSS region transcription start site region 5582
Cpgi22563 X 6399669 to 6400929 1260 CpG island CpG island 22563
Shroom4 X 6399940 to 6637454 237514 + protein coding gene shroom family member 4
Tssr160356 X 6400027 to 6400061 34 + TSS region transcription start site region 160356
Tssr160357 X 6400076 to 6400109 33 + TSS region transcription start site region 160357
Tssr160358 X 6400111 to 6400144 33 + TSS region transcription start site region 160358
Tssr5583 X 6415697 to 6415712 15 + TSS region transcription start site region 5583
Tssr160359 X 6415725 to 6415730 5 + TSS region transcription start site region 160359
Tssr160360 X 6415736 to 6415747 11 + TSS region transcription start site region 160360
Tssr160361 X 6416941 to 6416955 14 + TSS region transcription start site region 160361
5430428K19Rik X 6452376 to 6574663 122287 - lncRNA gene RIKEN cDNA 5430428K19 gene
DXMit204 X 6488876 to 6489049 173 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 204
DXMit203 X 6502911 to 6503060 149 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 203
Tssr160362 X 6577259 to 6577294 35 + TSS region transcription start site region 160362
Tssr160363 X 6577310 to 6577327 17 + TSS region transcription start site region 160363
Tssr160364 X 6778473 to 6778488 15 + TSS region transcription start site region 160364
Dgkk X 6779306 to 6948363 169057 + protein coding gene diacylglycerol kinase kappa
Cpgi22564 X 6780231 to 6780398 167 CpG island CpG island 22564
Tssr160365 X 6945247 to 6945261 14 + TSS region transcription start site region 160365
Ccnb3 X 6979652 to 7041619 61967 - protein coding gene cyclin B3
Tssr162770 X 7041650 to 7041658 8 - TSS region transcription start site region 162770
Tssr160366 X 7067496 to 7067515 19 + TSS region transcription start site region 160366
Tssr160367 X 7067516 to 7067534 18 + TSS region transcription start site region 160367
Akap4 X 7067519 to 7078609 11090 + protein coding gene A kinase (PRKA) anchor protein 4
Tssr160368 X 7068208 to 7068219 11 + TSS region transcription start site region 160368
DXMit123 X 7125097 to 7125216 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 123
Gm14380 X 7142858 to 7143288 430 - pseudogene predicted gene 14380
Clcn5 X 7153810 to 7319358 165548 - protein coding gene chloride channel, voltage-sensitive 5
Tssr162771 X 7188636 to 7188650 14 - TSS region transcription start site region 162771
Tssr162772 X 7188660 to 7188671 11 - TSS region transcription start site region 162772
Tssr162773 X 7188673 to 7188712 39 - TSS region transcription start site region 162773
Tssr162774 X 7188713 to 7188743 30 - TSS region transcription start site region 162774
Gm26401 X 7229775 to 7229850 75 + snoRNA gene predicted gene, 26401