Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:10711591-11541614

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10489 X 10707176 to 10717242 10066 - lincRNA gene predicted gene 10489
Tssr160547 X 10715036 to 10715057 21 + TSS region transcription start site region 160547
Cpgi22604 X 10717194 to 10717662 468 CpG island CpG island 22604
Mid1ip1 X 10717365 to 10719702 2337 + protein coding gene Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
Tssr160548 X 10717439 to 10717450 11 + TSS region transcription start site region 160548
Tssr160549 X 10717451 to 10717491 40 + TSS region transcription start site region 160549
Tssr162981 X 10717451 to 10717456 5 - TSS region transcription start site region 162981
Gm14493 X 10717473 to 10718710 1237 - antisense lncRNA gene predicted gene 14493
Tssr160550 X 10717502 to 10717514 12 + TSS region transcription start site region 160550
Tssr160551 X 10717578 to 10717596 18 + TSS region transcription start site region 160551
Cpgi22605 X 10717983 to 10718699 716 CpG island CpG island 22605
Tssr160552 X 10718534 to 10718543 9 + TSS region transcription start site region 160552
DXMit102 X 10793966 to 10794095 129 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 102
Gm14473 X 10865077 to 10865633 556 - pseudogene predicted gene 14473
Gm33984 X 10884060 to 10912210 28150 + lncRNA gene predicted gene, 33984
Tssr160553 X 10911557 to 10911565 8 + TSS region transcription start site region 160553
Gm39494 X 10989143 to 10991957 2814 - lncRNA gene predicted gene, 39494
Gm14485 X 11020515 to 11021007 492 - pseudogene predicted gene 14485
Tssr162982 X 11126591 to 11126614 23 - TSS region transcription start site region 162982
Gm14481 X 11220607 to 11221235 628 + pseudogene predicted gene 14481
DXMit27 X 11247634 to 11247773 139 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 27
H2al1a X 11299257 to 11299757 500 + protein coding gene H2A histone family member L1A
H2al1b X 11302432 to 11302921 489 + protein coding gene H2A histone family member L1B
H2al1c X 11305655 to 11305972 317 + protein coding gene H2A histone family member L1C
H2al1d X 11308824 to 11309141 317 + protein coding gene H2A histone family member L1D
H2al1e X 11311934 to 11312427 493 + protein coding gene H2A histone family member L1E
H2al1f X 11315158 to 11315475 317 + protein coding gene H2A histone family member L1F
H2al1g X 11318256 to 11318764 508 + protein coding gene H2A histone family member L1G
H2al1h X 11321492 to 11321809 317 + protein coding gene H2A histone family member L1H
H2al1i X 11324659 to 11324976 317 + protein coding gene H2A histone family member L1I
H2al1j X 11327822 to 11328151 329 + protein coding gene H2A histone family member L1J
Gm39495 X 11362034 to 11363510 1476 + lncRNA gene predicted gene, 39495
Gm34077 X 11395860 to 11418640 22780 - lncRNA gene predicted gene, 34077
Gm34138 X 11434263 to 11437179 2916 - lncRNA gene predicted gene, 34138
Gm39496 X 11487873 to 11525733 37860 - lncRNA gene predicted gene, 39496
8430439B09Rik X 11493925 to 11494290 365 unclassified gene RIKEN cDNA 8430439B09 gene
DXMit162 X 11513703 to 11513827 124 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 162
Gm34187 X 11528393 to 11533441 5048 - lncRNA gene predicted gene, 34187