Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:70107350-70499766

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam81a 9 70088511 to 70142555 54044 - protein coding gene family with sequence similarity 81, member A
Cpgi21998 9 70140918 to 70142094 1176 CpG island CpG island 21998
Tssr90399 9 70141356 to 70141482 126 - TSS region transcription start site region 90399
Tssr90400 9 70141484 to 70141559 75 - TSS region transcription start site region 90400
Tssr90401 9 70142172 to 70142183 11 - TSS region transcription start site region 90401
Gm24257 9 70148806 to 70148936 130 - snoRNA gene predicted gene, 24257
Gm39476 9 70149687 to 70160267 10580 - lncRNA gene predicted gene, 39476
Gm26849 9 70169986 to 70197548 27562 - lincRNA gene predicted gene, 26849
Tssr90402 9 70197470 to 70197478 8 - TSS region transcription start site region 90402
Cpgi21999 9 70207022 to 70208412 1390 CpG island CpG island 21999
Tssr85878 9 70207342 to 70207356 14 + TSS region transcription start site region 85878
Myo1e 9 70207350 to 70399766 192416 + protein coding gene myosin IE
Tssr85879 9 70207375 to 70207387 12 + TSS region transcription start site region 85879
Tssr85880 9 70207398 to 70207414 16 + TSS region transcription start site region 85880
Tssr90403 9 70211721 to 70211744 23 - TSS region transcription start site region 90403
Tssr85881 9 70213211 to 70213214 3 + TSS region transcription start site region 85881
Tssr90404 9 70217369 to 70217409 40 - TSS region transcription start site region 90404
Tssr85882 9 70220715 to 70220736 21 + TSS region transcription start site region 85882
Tssr85883 9 70220746 to 70220766 20 + TSS region transcription start site region 85883
Tssr85884 9 70221035 to 70221044 9 + TSS region transcription start site region 85884
Tssr85885 9 70221074 to 70221088 14 + TSS region transcription start site region 85885
Tssr85886 9 70235162 to 70235206 44 + TSS region transcription start site region 85886
Tssr85887 9 70235869 to 70235901 32 + TSS region transcription start site region 85887
Tssr85888 9 70240367 to 70240385 18 + TSS region transcription start site region 85888
Tssr85889 9 70250575 to 70250589 14 + TSS region transcription start site region 85889
Tssr85890 9 70270957 to 70270960 3 + TSS region transcription start site region 85890
Tssr85891 9 70275889 to 70275911 22 + TSS region transcription start site region 85891
Tssr85892 9 70281348 to 70281352 4 + TSS region transcription start site region 85892
Gm40531 9 70287068 to 70298583 11515 - lncRNA gene predicted gene, 40531
Tssr85893 9 70298283 to 70298292 9 + TSS region transcription start site region 85893
4833444G19Rik 9 70311093 to 70314323 3230 unclassified non-coding RNA gene RIKEN cDNA 4833444G19 gene
Tssr85894 9 70314209 to 70314258 49 + TSS region transcription start site region 85894
Tssr85895 9 70317183 to 70317204 21 + TSS region transcription start site region 85895
Tssr85896 9 70321385 to 70321394 9 + TSS region transcription start site region 85896
Tssr85897 9 70321607 to 70321651 44 + TSS region transcription start site region 85897
Tssr85898 9 70342042 to 70342055 13 + TSS region transcription start site region 85898
Gm18017 9 70343871 to 70344633 762 + pseudogene predicted gene, 18017
Tssr85899 9 70370406 to 70370418 12 + TSS region transcription start site region 85899
Tssr2924 9 70389751 to 70389753 2 + TSS region transcription start site region 2924
Tssr85900 9 70398852 to 70398871 19 + TSS region transcription start site region 85900
Tssr85901 9 70399323 to 70399349 26 + TSS region transcription start site region 85901
Tssr85902 9 70399355 to 70399394 39 + TSS region transcription start site region 85902
Tssr85903 9 70399420 to 70399431 11 + TSS region transcription start site region 85903
Mir5626 9 70405694 to 70405753 59 - miRNA gene microRNA 5626
Ccnb2 9 70407692 to 70421547 13855 - protein coding gene cyclin B2
Tssr90405 9 70413233 to 70413274 41 - TSS region transcription start site region 90405
Cpgi22000 9 70421166 to 70421713 547 CpG island CpG island 22000
Tssr90406 9 70421491 to 70421529 38 - TSS region transcription start site region 90406
Tssr90407 9 70421533 to 70421592 59 - TSS region transcription start site region 90407
Rnf111 9 70425424 to 70503725 78301 - protein coding gene ring finger 111
Tssr90408 9 70455669 to 70455673 4 - TSS region transcription start site region 90408
Tssr90409 9 70457883 to 70457899 16 - TSS region transcription start site region 90409
Gm24615 9 70475484 to 70475596 112 + snoRNA gene predicted gene, 24615
Tssr90410 9 70484802 to 70484811 9 - TSS region transcription start site region 90410
Tssr90411 9 70488117 to 70488120 3 - TSS region transcription start site region 90411