Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58495996-59116248

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Insyn1 9 58488603 to 58499742 11139 + protein coding gene inhibitory synaptic factor 1
Cd276 9 58524300 to 58555033 30733 - protein coding gene CD276 antigen
Tssr89911 9 58526171 to 58526185 14 - TSS region transcription start site region 89911
Cpgi21849 9 58537201 to 58537428 227 CpG island CpG island 21849
Cpgi21850 9 58554465 to 58555624 1159 CpG island CpG island 21850
Gm10657 9 58554799 to 58555829 1030 + protein coding gene predicted gene 10657
Tssr89912 9 58555081 to 58555127 46 - TSS region transcription start site region 89912
Tssr89913 9 58555129 to 58555143 14 - TSS region transcription start site region 89913
Tssr89914 9 58555187 to 58555217 30 - TSS region transcription start site region 89914
Tssr89915 9 58555219 to 58555246 27 - TSS region transcription start site region 89915
Tssr89916 9 58556139 to 58556155 16 - TSS region transcription start site region 89916
Cpgi21851 9 58581753 to 58583150 1397 CpG island CpG island 21851
Tssr89917 9 58582073 to 58582090 17 - TSS region transcription start site region 89917
Nptn 9 58582240 to 58652879 70639 + protein coding gene neuroplastin
Tssr85398 9 58582258 to 58582269 11 + TSS region transcription start site region 85398
Tssr85399 9 58582397 to 58582416 19 + TSS region transcription start site region 85399
Tssr85400 9 58599385 to 58599389 4 + TSS region transcription start site region 85400
Tssr85401 9 58603729 to 58603752 23 + TSS region transcription start site region 85401
Tssr85402 9 58607482 to 58607484 2 + TSS region transcription start site region 85402
Tssr85403 9 58611518 to 58611525 7 + TSS region transcription start site region 85403
Tssr85404 9 58614368 to 58614372 4 + TSS region transcription start site region 85404
Tssr85405 9 58618763 to 58618777 14 + TSS region transcription start site region 85405
Tssr85406 9 58629102 to 58629110 8 + TSS region transcription start site region 85406
Tssr85407 9 58629112 to 58629123 11 + TSS region transcription start site region 85407
Tssr85408 9 58629124 to 58629134 10 + TSS region transcription start site region 85408
Tssr85409 9 58640737 to 58640759 22 + TSS region transcription start site region 85409
D9Ertd167e 9 58646496 to 58646703 207 DNA segment DNA segment, Chr 9, ERATO Doi 167, expressed
Tssr85410 9 58652034 to 58652088 54 + TSS region transcription start site region 85410
Tssr85411 9 58652418 to 58652448 30 + TSS region transcription start site region 85411
Rec114 9 58652856 to 58741563 88707 - protein coding gene REC114 meiotic recombination protein
Tssr85412 9 58653117 to 58653153 36 + TSS region transcription start site region 85412
Tssr89918 9 58657823 to 58657878 55 - TSS region transcription start site region 89918
Tssr89919 9 58657887 to 58657898 11 - TSS region transcription start site region 89919
A130026P03Rik 9 58666664 to 58668843 2179 unclassified gene RIKEN cDNA A130026P03 gene
Gm20620 9 58695844 to 58696011 167 - pseudogene predicted gene 20620
Cpgi21852 9 58741396 to 58741680 284 CpG island CpG island 21852
Tssr89920 9 58741543 to 58741580 37 - TSS region transcription start site region 89920
Gm21183 9 58750745 to 58751269 524 - pseudogene predicted gene, 21183
Tssr85413 9 58803525 to 58803537 12 + TSS region transcription start site region 85413
Cpgi21853 9 58805996 to 58806248 252 CpG island CpG island 21853
Cpgi21854 9 58822051 to 58824609 2558 CpG island CpG island 21854
Tssr85414 9 58822848 to 58822862 14 + TSS region transcription start site region 85414
Tssr85415 9 58822939 to 58822966 27 + TSS region transcription start site region 85415
Hcn4 9 58823512 to 58860955 37443 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 4
Cpgi21855 9 58859006 to 58859559 553 CpG island CpG island 21855
Tssr89921 9 58869433 to 58869456 23 - TSS region transcription start site region 89921
Neo1 9 58874687 to 59036441 161754 - protein coding gene neogenin
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
Tssr89922 9 58979135 to 58979148 13 - TSS region transcription start site region 89922
Gm47271 9 58979251 to 59033856 54605 + antisense lncRNA gene predicted gene, 47271
Cpgi21856 9 59035415 to 59037364 1949 CpG island CpG island 21856
Tssr89923 9 59036202 to 59036221 19 - TSS region transcription start site region 89923
Tssr89924 9 59036235 to 59036244 9 - TSS region transcription start site region 89924
Tssr89925 9 59036280 to 59036293 13 - TSS region transcription start site region 89925
Tssr89926 9 59036323 to 59036344 21 - TSS region transcription start site region 89926
Tssr89927 9 59036366 to 59036383 17 - TSS region transcription start site region 89927
Tssr89928 9 59036387 to 59036460 73 - TSS region transcription start site region 89928
Tssr89929 9 59036872 to 59036885 13 - TSS region transcription start site region 89929
Tssr89930 9 59036941 to 59036955 14 - TSS region transcription start site region 89930
Gm38638 9 59040766 to 59041821 1055 - pseudogene predicted gene, 38638